(13 nodes) Preribosome, small subunit precursor network (Fonsecaea erecta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AYL99_11318	Uncharacterized protein. (274 aa)
	AYL99_11257	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. (403 aa)
	AYL99_11300	CBF domain-containing protein. (294 aa)
	AYL99_10320	Bms1-type G domain-containing protein. (852 aa)
	AYL99_09774	DRIM domain-containing protein. (2576 aa)
	AYL99_10045	WD_REPEATS_REGION domain-containing protein. (559 aa)
	AYL99_07185	40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family. (264 aa)
	AYL99_04760	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (337 aa)
	AYL99_05165	Uncharacterized protein. (531 aa)
	AYL99_03386	Uncharacterized protein. (464 aa)
	AYL99_03854	20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family. (444 aa)
	AYL99_02214	RIO domain-containing protein. (383 aa)
	AYL99_02724	Uncharacterized protein. (907 aa)

Your Current Organism:

Fonsecaea erecta

NCBI taxonomy Id: 1367422
Other names: F. erecta, Fonsecaea erecta V. A. Vicente, Najafzadeh, Sun & de Hoog 2013, Fonsecaea sp. RG-2013a

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AYL99_02214	AYL99_02724	A0A178ZT68	A0A178ZUQ9	RIO domain-containing protein.	Uncharacterized protein.	0.819
AYL99_02214	AYL99_03386	A0A178ZT68	A0A178ZQ99	RIO domain-containing protein.	Uncharacterized protein.	0.999
AYL99_02214	AYL99_03854	A0A178ZT68	A0A178ZQB5	RIO domain-containing protein.	20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family.	0.999
AYL99_02214	AYL99_04760	A0A178ZT68	A0A178ZIY5	RIO domain-containing protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.993
AYL99_02214	AYL99_05165	A0A178ZT68	A0A178ZLS1	RIO domain-containing protein.	Uncharacterized protein.	0.994
AYL99_02214	AYL99_07185	A0A178ZT68	A0A178ZGB9	RIO domain-containing protein.	40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.	0.995
AYL99_02214	AYL99_10045	A0A178ZT68	A0A178Z9M4	RIO domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.504
AYL99_02214	AYL99_10320	A0A178ZT68	A0A178Z6G8	RIO domain-containing protein.	Bms1-type G domain-containing protein.	0.997
AYL99_02214	AYL99_11257	A0A178ZT68	A0A178Z4Y3	RIO domain-containing protein.	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	0.981
AYL99_02214	AYL99_11300	A0A178ZT68	A0A178Z556	RIO domain-containing protein.	CBF domain-containing protein.	0.693
AYL99_02214	AYL99_11318	A0A178ZT68	A0A178Z3C0	RIO domain-containing protein.	Uncharacterized protein.	0.602
AYL99_02724	AYL99_02214	A0A178ZUQ9	A0A178ZT68	Uncharacterized protein.	RIO domain-containing protein.	0.819
AYL99_02724	AYL99_03386	A0A178ZUQ9	A0A178ZQ99	Uncharacterized protein.	Uncharacterized protein.	0.936
AYL99_02724	AYL99_03854	A0A178ZUQ9	A0A178ZQB5	Uncharacterized protein.	20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family.	0.877
AYL99_02724	AYL99_04760	A0A178ZUQ9	A0A178ZIY5	Uncharacterized protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.999
AYL99_02724	AYL99_05165	A0A178ZUQ9	A0A178ZLS1	Uncharacterized protein.	Uncharacterized protein.	0.998
AYL99_02724	AYL99_07185	A0A178ZUQ9	A0A178ZGB9	Uncharacterized protein.	40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.	0.936
AYL99_02724	AYL99_09774	A0A178ZUQ9	A0A178Z7E2	Uncharacterized protein.	DRIM domain-containing protein.	0.999
AYL99_02724	AYL99_10045	A0A178ZUQ9	A0A178Z9M4	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.999
AYL99_02724	AYL99_10320	A0A178ZUQ9	A0A178Z6G8	Uncharacterized protein.	Bms1-type G domain-containing protein.	0.944