(12 nodes) Preribosome, small subunit precursor network (Fonsecaea erecta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AYL99_09774	DRIM domain-containing protein. (2576 aa)
	AYL99_01482	Uncharacterized protein. (693 aa)
	AYL99_02724	Uncharacterized protein. (907 aa)
	AYL99_02214	RIO domain-containing protein. (383 aa)
	AYL99_04597	Uncharacterized protein. (195 aa)
	AYL99_03386	Uncharacterized protein. (464 aa)
	AYL99_05872	RRM domain-containing protein. (640 aa)
	AYL99_05165	Uncharacterized protein. (531 aa)
	AYL99_08270	Uncharacterized protein. (324 aa)
	AYL99_10320	Bms1-type G domain-containing protein. (852 aa)
	AYL99_11300	CBF domain-containing protein. (294 aa)
	AYL99_11318	Uncharacterized protein. (274 aa)

Your Current Organism:

Fonsecaea erecta

NCBI taxonomy Id: 1367422
Other names: F. erecta, Fonsecaea erecta V. A. Vicente, Najafzadeh, Sun & de Hoog 2013, Fonsecaea sp. RG-2013a

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AYL99_01482	AYL99_02214	A0A179A037	A0A178ZT68	Uncharacterized protein.	RIO domain-containing protein.	0.422
AYL99_01482	AYL99_02724	A0A179A037	A0A178ZUQ9	Uncharacterized protein.	Uncharacterized protein.	0.643
AYL99_01482	AYL99_03386	A0A179A037	A0A178ZQ99	Uncharacterized protein.	Uncharacterized protein.	0.408
AYL99_01482	AYL99_05165	A0A179A037	A0A178ZLS1	Uncharacterized protein.	Uncharacterized protein.	0.955
AYL99_01482	AYL99_05872	A0A179A037	A0A178ZM48	Uncharacterized protein.	RRM domain-containing protein.	0.681
AYL99_01482	AYL99_08270	A0A179A037	A0A178ZD03	Uncharacterized protein.	Uncharacterized protein.	0.509
AYL99_01482	AYL99_10320	A0A179A037	A0A178Z6G8	Uncharacterized protein.	Bms1-type G domain-containing protein.	0.857
AYL99_01482	AYL99_11300	A0A179A037	A0A178Z556	Uncharacterized protein.	CBF domain-containing protein.	0.577
AYL99_01482	AYL99_11318	A0A179A037	A0A178Z3C0	Uncharacterized protein.	Uncharacterized protein.	0.487
AYL99_02214	AYL99_01482	A0A178ZT68	A0A179A037	RIO domain-containing protein.	Uncharacterized protein.	0.422
AYL99_02214	AYL99_02724	A0A178ZT68	A0A178ZUQ9	RIO domain-containing protein.	Uncharacterized protein.	0.819
AYL99_02214	AYL99_03386	A0A178ZT68	A0A178ZQ99	RIO domain-containing protein.	Uncharacterized protein.	0.999
AYL99_02214	AYL99_05165	A0A178ZT68	A0A178ZLS1	RIO domain-containing protein.	Uncharacterized protein.	0.994
AYL99_02214	AYL99_05872	A0A178ZT68	A0A178ZM48	RIO domain-containing protein.	RRM domain-containing protein.	0.725
AYL99_02214	AYL99_10320	A0A178ZT68	A0A178Z6G8	RIO domain-containing protein.	Bms1-type G domain-containing protein.	0.997
AYL99_02214	AYL99_11300	A0A178ZT68	A0A178Z556	RIO domain-containing protein.	CBF domain-containing protein.	0.693
AYL99_02214	AYL99_11318	A0A178ZT68	A0A178Z3C0	RIO domain-containing protein.	Uncharacterized protein.	0.602
AYL99_02724	AYL99_01482	A0A178ZUQ9	A0A179A037	Uncharacterized protein.	Uncharacterized protein.	0.643
AYL99_02724	AYL99_02214	A0A178ZUQ9	A0A178ZT68	Uncharacterized protein.	RIO domain-containing protein.	0.819
AYL99_02724	AYL99_03386	A0A178ZUQ9	A0A178ZQ99	Uncharacterized protein.	Uncharacterized protein.	0.936