(10 nodes) GID complex network (Fonsecaea erecta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AYL99_05911	IU_nuc_hydro domain-containing protein. (433 aa)
	AYL99_05267	Uncharacterized protein. (428 aa)
	AYL99_03274	Uncharacterized protein. (434 aa)
	AYL99_04141	RED_N domain-containing protein. (513 aa)
	AYL99_00734	Uncharacterized protein. (619 aa)
	AYL99_11324	Ubiquitin-like domain-containing protein. (735 aa)
	AYL99_08579	Uncharacterized protein. (966 aa)
	AYL99_07106	Uncharacterized protein. (743 aa)
	AYL99_07699	LisH domain-containing protein. (409 aa)
	AYL99_07153	IU_nuc_hydro domain-containing protein. (369 aa)

Your Current Organism:

Fonsecaea erecta

NCBI taxonomy Id: 1367422
Other names: F. erecta, Fonsecaea erecta V. A. Vicente, Najafzadeh, Sun & de Hoog 2013, Fonsecaea sp. RG-2013a

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AYL99_00734	AYL99_03274	A0A178ZYH3	A0A178ZPE3	Uncharacterized protein.	Uncharacterized protein.	0.711
AYL99_00734	AYL99_07699	A0A178ZYH3	A0A178ZFP5	Uncharacterized protein.	LisH domain-containing protein.	0.953
AYL99_00734	AYL99_11324	A0A178ZYH3	A0A178Z4W2	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.826
AYL99_03274	AYL99_00734	A0A178ZPE3	A0A178ZYH3	Uncharacterized protein.	Uncharacterized protein.	0.711
AYL99_03274	AYL99_07699	A0A178ZPE3	A0A178ZFP5	Uncharacterized protein.	LisH domain-containing protein.	0.672
AYL99_03274	AYL99_11324	A0A178ZPE3	A0A178Z4W2	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.561
AYL99_05267	AYL99_07699	A0A178ZMK7	A0A178ZFP5	Uncharacterized protein.	LisH domain-containing protein.	0.786
AYL99_05267	AYL99_11324	A0A178ZMK7	A0A178Z4W2	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.649
AYL99_05911	AYL99_07153	A0A178ZM67	A0A178ZFU4	IU_nuc_hydro domain-containing protein.	IU_nuc_hydro domain-containing protein.	0.529
AYL99_07153	AYL99_05911	A0A178ZFU4	A0A178ZM67	IU_nuc_hydro domain-containing protein.	IU_nuc_hydro domain-containing protein.	0.529
AYL99_07699	AYL99_00734	A0A178ZFP5	A0A178ZYH3	LisH domain-containing protein.	Uncharacterized protein.	0.953
AYL99_07699	AYL99_03274	A0A178ZFP5	A0A178ZPE3	LisH domain-containing protein.	Uncharacterized protein.	0.672
AYL99_07699	AYL99_05267	A0A178ZFP5	A0A178ZMK7	LisH domain-containing protein.	Uncharacterized protein.	0.786
AYL99_07699	AYL99_11324	A0A178ZFP5	A0A178Z4W2	LisH domain-containing protein.	Ubiquitin-like domain-containing protein.	0.889
AYL99_11324	AYL99_00734	A0A178Z4W2	A0A178ZYH3	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.826
AYL99_11324	AYL99_03274	A0A178Z4W2	A0A178ZPE3	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.561
AYL99_11324	AYL99_05267	A0A178Z4W2	A0A178ZMK7	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.649
AYL99_11324	AYL99_07699	A0A178Z4W2	A0A178ZFP5	Ubiquitin-like domain-containing protein.	LisH domain-containing protein.	0.889