21 items (Fonsecaea erecta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AYL99_08015	HORMA domain-containing protein. (315 aa)
	AYL99_05600	BZIP domain-containing protein. (434 aa)
	AYL99_04149	DNA repair protein REV1; Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template- dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents; Belongs to the DNA polymerase type-Y family. (1142 aa)
	AYL99_02211	Uncharacterized protein. (131 aa)
	AYL99_01780	Uncharacterized protein. (308 aa)
	AYL99_02996	Polyubiquitin. (229 aa)
	AYL99_02602	Uncharacterized protein. (559 aa)
	AYL99_01736	AAA domain-containing protein. (1107 aa)
	AYL99_01398	Ubiquitin-40S ribosomal protein S27a. (154 aa)
	AYL99_12028	BZIP domain-containing protein. (129 aa)
	AYL99_12021	Uncharacterized protein. (666 aa)
	AYL99_11924	RT_RNaseH_2 domain-containing protein. (136 aa)
	AYL99_11593	RT_RNaseH_2 domain-containing protein. (153 aa)
	AYL99_11873	Reverse transcriptase domain-containing protein. (499 aa)
	AYL99_11717	C2H2-type domain-containing protein. (699 aa)
	AYL99_11672	RT_RNaseH_2 domain-containing protein. (320 aa)
	AYL99_07384	Zds_C domain-containing protein. (837 aa)
	AYL99_10958	Uncharacterized protein. (148 aa)
	AYL99_06329	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. (606 aa)
	AYL99_11718	Uncharacterized protein. (570 aa)
	AYL99_09925	DNA polymerase. (1977 aa)

Your Current Organism:

Fonsecaea erecta

NCBI taxonomy Id: 1367422
Other names: F. erecta, Fonsecaea erecta V. A. Vicente, Najafzadeh, Sun & de Hoog 2013, Fonsecaea sp. RG-2013a

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AYL99_01398	AYL99_01736	A0A179A1K2	A0A179A0U8	Ubiquitin-40S ribosomal protein S27a.	AAA domain-containing protein.	0.623
AYL99_01398	AYL99_02996	A0A179A1K2	A0A178ZVH7	Ubiquitin-40S ribosomal protein S27a.	Polyubiquitin.	0.964
AYL99_01398	AYL99_04149	A0A179A1K2	A0A178ZRF4	Ubiquitin-40S ribosomal protein S27a.	DNA repair protein REV1; Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template- dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents; Belongs to the DNA polymerase type-Y family.	0.873
AYL99_01398	AYL99_06329	A0A179A1K2	A0A178ZHB5	Ubiquitin-40S ribosomal protein S27a.	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.625
AYL99_01398	AYL99_08015	A0A179A1K2	A0A178ZBX1	Ubiquitin-40S ribosomal protein S27a.	HORMA domain-containing protein.	0.662
AYL99_01736	AYL99_01398	A0A179A0U8	A0A179A1K2	AAA domain-containing protein.	Ubiquitin-40S ribosomal protein S27a.	0.623
AYL99_01736	AYL99_02996	A0A179A0U8	A0A178ZVH7	AAA domain-containing protein.	Polyubiquitin.	0.644
AYL99_01736	AYL99_04149	A0A179A0U8	A0A178ZRF4	AAA domain-containing protein.	DNA repair protein REV1; Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template- dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents; Belongs to the DNA polymerase type-Y family.	0.665
AYL99_01736	AYL99_05600	A0A179A0U8	A0A178ZLB9	AAA domain-containing protein.	BZIP domain-containing protein.	0.623
AYL99_01736	AYL99_06329	A0A179A0U8	A0A178ZHB5	AAA domain-containing protein.	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.896
AYL99_01736	AYL99_08015	A0A179A0U8	A0A178ZBX1	AAA domain-containing protein.	HORMA domain-containing protein.	0.660
AYL99_01736	AYL99_09925	A0A179A0U8	A0A178Z9B0	AAA domain-containing protein.	DNA polymerase.	0.793
AYL99_01736	AYL99_12028	A0A179A0U8	A0A178Z1U9	AAA domain-containing protein.	BZIP domain-containing protein.	0.623
AYL99_01780	AYL99_06329	A0A178ZTP2	A0A178ZHB5	Uncharacterized protein.	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.773
AYL99_02211	AYL99_06329	A0A178ZT49	A0A178ZHB5	Uncharacterized protein.	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.936
AYL99_02602	AYL99_06329	A0A178ZWJ7	A0A178ZHB5	Uncharacterized protein.	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.773
AYL99_02996	AYL99_01398	A0A178ZVH7	A0A179A1K2	Polyubiquitin.	Ubiquitin-40S ribosomal protein S27a.	0.964
AYL99_02996	AYL99_01736	A0A178ZVH7	A0A179A0U8	Polyubiquitin.	AAA domain-containing protein.	0.644
AYL99_02996	AYL99_04149	A0A178ZVH7	A0A178ZRF4	Polyubiquitin.	DNA repair protein REV1; Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template- dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents; Belongs to the DNA polymerase type-Y family.	0.873
AYL99_02996	AYL99_05600	A0A178ZVH7	A0A178ZLB9	Polyubiquitin.	BZIP domain-containing protein.	0.950