12 items (Fonsecaea erecta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AYL99_12028	BZIP domain-containing protein. (129 aa)
	AYL99_11163	Uncharacterized protein. (558 aa)
	AYL99_08773	Uncharacterized protein. (1227 aa)
	AYL99_08436	Uncharacterized protein. (176 aa)
	AYL99_07122	Uncharacterized protein. (197 aa)
	AYL99_06957	Uncharacterized protein. (158 aa)
	AYL99_05600	BZIP domain-containing protein. (434 aa)
	AYL99_03463	AB hydrolase-1 domain-containing protein. (417 aa)
	AYL99_03691	AB hydrolase-1 domain-containing protein. (386 aa)
	AYL99_02996	Polyubiquitin. (229 aa)
	AYL99_00332	Uncharacterized protein. (174 aa)
	AYL99_01398	Ubiquitin-40S ribosomal protein S27a. (154 aa)

Your Current Organism:

Fonsecaea erecta

NCBI taxonomy Id: 1367422
Other names: F. erecta, Fonsecaea erecta V. A. Vicente, Najafzadeh, Sun & de Hoog 2013, Fonsecaea sp. RG-2013a

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AYL99_00332	AYL99_06957	A0A178ZX04	A0A178ZIN8	Uncharacterized protein.	Uncharacterized protein.	0.574
AYL99_01398	AYL99_02996	A0A179A1K2	A0A178ZVH7	Ubiquitin-40S ribosomal protein S27a.	Polyubiquitin.	0.964
AYL99_01398	AYL99_06957	A0A179A1K2	A0A178ZIN8	Ubiquitin-40S ribosomal protein S27a.	Uncharacterized protein.	0.569
AYL99_01398	AYL99_07122	A0A179A1K2	A0A178ZEG2	Ubiquitin-40S ribosomal protein S27a.	Uncharacterized protein.	0.639
AYL99_01398	AYL99_11163	A0A179A1K2	A0A178Z6N1	Ubiquitin-40S ribosomal protein S27a.	Uncharacterized protein.	0.530
AYL99_02996	AYL99_01398	A0A178ZVH7	A0A179A1K2	Polyubiquitin.	Ubiquitin-40S ribosomal protein S27a.	0.964
AYL99_02996	AYL99_05600	A0A178ZVH7	A0A178ZLB9	Polyubiquitin.	BZIP domain-containing protein.	0.950
AYL99_02996	AYL99_06957	A0A178ZVH7	A0A178ZIN8	Polyubiquitin.	Uncharacterized protein.	0.506
AYL99_02996	AYL99_07122	A0A178ZVH7	A0A178ZEG2	Polyubiquitin.	Uncharacterized protein.	0.732
AYL99_02996	AYL99_12028	A0A178ZVH7	A0A178Z1U9	Polyubiquitin.	BZIP domain-containing protein.	0.950
AYL99_03463	AYL99_06957	A0A178ZNN5	A0A178ZIN8	AB hydrolase-1 domain-containing protein.	Uncharacterized protein.	0.574
AYL99_03691	AYL99_06957	A0A178ZNU3	A0A178ZIN8	AB hydrolase-1 domain-containing protein.	Uncharacterized protein.	0.574
AYL99_05600	AYL99_02996	A0A178ZLB9	A0A178ZVH7	BZIP domain-containing protein.	Polyubiquitin.	0.950
AYL99_05600	AYL99_06957	A0A178ZLB9	A0A178ZIN8	BZIP domain-containing protein.	Uncharacterized protein.	0.569
AYL99_05600	AYL99_07122	A0A178ZLB9	A0A178ZEG2	BZIP domain-containing protein.	Uncharacterized protein.	0.639
AYL99_05600	AYL99_11163	A0A178ZLB9	A0A178Z6N1	BZIP domain-containing protein.	Uncharacterized protein.	0.530
AYL99_06957	AYL99_00332	A0A178ZIN8	A0A178ZX04	Uncharacterized protein.	Uncharacterized protein.	0.574
AYL99_06957	AYL99_01398	A0A178ZIN8	A0A179A1K2	Uncharacterized protein.	Ubiquitin-40S ribosomal protein S27a.	0.569
AYL99_06957	AYL99_02996	A0A178ZIN8	A0A178ZVH7	Uncharacterized protein.	Polyubiquitin.	0.506
AYL99_06957	AYL99_03463	A0A178ZIN8	A0A178ZNN5	Uncharacterized protein.	AB hydrolase-1 domain-containing protein.	0.574