67 items (Fonsecaea erecta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AYL99_02868	DNA-directed RNA polymerase II subunit F. (153 aa)
	AYL99_12028	BZIP domain-containing protein. (129 aa)
	AYL99_12021	Uncharacterized protein. (666 aa)
	AYL99_11924	RT_RNaseH_2 domain-containing protein. (136 aa)
	AYL99_11593	RT_RNaseH_2 domain-containing protein. (153 aa)
	AYL99_11873	Reverse transcriptase domain-containing protein. (499 aa)
	AYL99_11611	AAA_12 domain-containing protein. (235 aa)
	AYL99_11717	C2H2-type domain-containing protein. (699 aa)
	AYL99_02840	AAA domain-containing protein. (407 aa)
	AYL99_01398	Ubiquitin-40S ribosomal protein S27a. (154 aa)
	AYL99_01215	Uncharacterized protein. (841 aa)
	AYL99_01736	AAA domain-containing protein. (1107 aa)
	AYL99_01214	Uncharacterized protein. (312 aa)
	AYL99_00924	CPSF_A domain-containing protein. (1197 aa)
	AYL99_00966	Pre-mRNA-splicing factor isy1. (252 aa)
	AYL99_00604	VWFA domain-containing protein. (226 aa)
	AYL99_00078	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1762 aa)
	AYL99_00451	Cyclin H; Belongs to the cyclin family. (373 aa)
	AYL99_00074	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1258 aa)
	AYL99_02602	Uncharacterized protein. (559 aa)
	AYL99_11672	RT_RNaseH_2 domain-containing protein. (320 aa)
	AYL99_10958	Uncharacterized protein. (148 aa)
	AYL99_11718	Uncharacterized protein. (570 aa)
	AYL99_10788	RING-type domain-containing protein. (270 aa)
	AYL99_10927	Pre-mRNA-splicing factor; Involved in mRNA splicing where it associates with cdc5 and the other cwf proteins as part of the spliceosome. (1411 aa)
	AYL99_10407	Replication factor C subunit 5. (355 aa)
	AYL99_10524	Replication factor C subunit 1. (1087 aa)
	AYL99_10161	Uncharacterized protein. (338 aa)
	AYL99_09883	Uncharacterized protein. (634 aa)
	AYL99_10103	RRM domain-containing protein. (178 aa)
	AYL99_09681	Uncharacterized protein. (231 aa)
	AYL99_09402	Uncharacterized protein. (1136 aa)
	AYL99_08970	Replication factor C subunit 4. (351 aa)
	AYL99_09735	DNA repair helicase rad15. (815 aa)
	AYL99_07384	Zds_C domain-containing protein. (837 aa)
	AYL99_07817	Peptidyl-prolyl cis-trans isomerase D. (367 aa)
	AYL99_06329	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. (606 aa)
	AYL99_06203	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (510 aa)
	AYL99_05270	Uncharacterized protein. (1175 aa)
	AYL99_05600	BZIP domain-containing protein. (434 aa)
	AYL99_05809	DNA-directed RNA polymerase II subunit K. (74 aa)
	AYL99_03365	RING-box protein 1A. (124 aa)
	AYL99_03607	CYCLIN domain-containing protein; Belongs to the cyclin family. (387 aa)
	AYL99_03897	Uncharacterized protein; Belongs to the peptidase C19 family. (1140 aa)
	AYL99_03891	Uncharacterized protein. (847 aa)
	AYL99_03874	AAA domain-containing protein. (408 aa)
	AYL99_03994	WD_REPEATS_REGION domain-containing protein. (534 aa)
	AYL99_04407	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (421 aa)
	AYL99_01844	Uncharacterized protein. (280 aa)
	AYL99_01901	Uncharacterized protein. (442 aa)
	AYL99_01927	CBFD_NFYB_HMF domain-containing protein. (199 aa)
	AYL99_04519	RNA_pol_L_2 domain-containing protein. (274 aa)
	AYL99_02124	Pre-mRNA-splicing factor syf1. (851 aa)
	AYL99_02164	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (143 aa)
	AYL99_02211	Uncharacterized protein. (131 aa)
	AYL99_01923	Uncharacterized protein. (231 aa)
	AYL99_01780	Uncharacterized protein. (308 aa)
	AYL99_02417	DNA-directed RNA polymerase II subunit G. (170 aa)
	AYL99_02437	Transcription elongation factor S-II. (308 aa)
	AYL99_02203	DNA-directed RNA polymerase II subunit C. (336 aa)
	AYL99_02418	Uncharacterized protein. (556 aa)
	AYL99_02210	CULLIN_2 domain-containing protein; Belongs to the cullin family. (902 aa)
	AYL99_02072	Uncharacterized protein. (478 aa)
	AYL99_02102	Uncharacterized protein. (528 aa)
	AYL99_02896	DNA-directed RNA polymerase II subunit D. (152 aa)
	AYL99_02996	Polyubiquitin. (229 aa)
	AYL99_03094	USP domain-containing protein; Belongs to the peptidase C19 family. (1373 aa)

Your Current Organism:

Fonsecaea erecta

NCBI taxonomy Id: 1367422
Other names: F. erecta, Fonsecaea erecta V. A. Vicente, Najafzadeh, Sun & de Hoog 2013, Fonsecaea sp. RG-2013a

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AYL99_00074	AYL99_00078	A0A178ZWN7	A0A178ZXH1	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.997
AYL99_00074	AYL99_00451	A0A178ZWN7	A0A178ZXD7	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Cyclin H; Belongs to the cyclin family.	0.902
AYL99_00074	AYL99_00604	A0A178ZWN7	A0A178ZY47	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	VWFA domain-containing protein.	0.977
AYL99_00074	AYL99_00924	A0A178ZWN7	A0A178ZYZ9	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	CPSF_A domain-containing protein.	0.930
AYL99_00074	AYL99_00966	A0A178ZWN7	A0A178ZYS4	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Pre-mRNA-splicing factor isy1.	0.507
AYL99_00074	AYL99_01215	A0A178ZWN7	A0A179A1D6	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.821
AYL99_00074	AYL99_01398	A0A178ZWN7	A0A179A1K2	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Ubiquitin-40S ribosomal protein S27a.	0.676
AYL99_00074	AYL99_01901	A0A178ZWN7	A0A178ZS68	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.976
AYL99_00074	AYL99_02072	A0A178ZWN7	A0A178ZUT2	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.551
AYL99_00074	AYL99_02124	A0A178ZWN7	A0A178ZSY5	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Pre-mRNA-splicing factor syf1.	0.542
AYL99_00074	AYL99_02164	A0A178ZWN7	A0A178ZT11	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.999
AYL99_00074	AYL99_02203	A0A178ZWN7	A0A178ZU01	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase II subunit C.	0.999
AYL99_00074	AYL99_02210	A0A178ZWN7	A0A178ZUR6	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.860
AYL99_00074	AYL99_02417	A0A178ZWN7	A0A178ZTT0	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase II subunit G.	0.999
AYL99_00074	AYL99_02418	A0A178ZWN7	A0A178ZUR1	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.981
AYL99_00074	AYL99_02437	A0A178ZWN7	A0A178ZTV8	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Transcription elongation factor S-II.	0.995
AYL99_00074	AYL99_02868	A0A178ZWN7	A0A178ZW10	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase II subunit F.	0.999
AYL99_00074	AYL99_02896	A0A178ZWN7	A0A178ZV81	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase II subunit D.	0.999
AYL99_00074	AYL99_02996	A0A178ZWN7	A0A178ZVH7	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Polyubiquitin.	0.713
AYL99_00074	AYL99_03365	A0A178ZWN7	A0A178ZMW9	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RING-box protein 1A.	0.891