STRINGSTRING
LSM10 LSM10 K7EY90_PELSI K7EY90_PELSI SF3B5 SF3B5 SF3B3 SF3B3 LOC102446719 LOC102446719 HFM1 HFM1 K7F3C4_PELSI K7F3C4_PELSI SART1 SART1 DDX23 DDX23 SF3B2 SF3B2 PPIL2 PPIL2 PRPF31 PRPF31 WBP11 WBP11 BCAS2 BCAS2 ZMAT2 ZMAT2 RBM41 RBM41 PPIL3 PPIL3 TXNL4B TXNL4B SF3A3 SF3A3 DDX46 DDX46 EFTUD2 EFTUD2 DDX41 DDX41 TXNL4A TXNL4A DHX8 DHX8 XAB2 XAB2 DHX35 DHX35 WBP4 WBP4 PHF5A PHF5A WDR70 WDR70 ZCCHC17 ZCCHC17 IK IK MFAP1 MFAP1 WDR25 WDR25 PRPF19 PRPF19 AQR AQR SRRM3 SRRM3 PRPF6 PRPF6 K7FL04_PELSI K7FL04_PELSI CWC27 CWC27 K7FLB2_PELSI K7FLB2_PELSI K7FLW2_PELSI K7FLW2_PELSI CWC22 CWC22 SNRNP200 SNRNP200 NSRP1 NSRP1 SNRPE SNRPE PPIL1 PPIL1 SNIP1 SNIP1 LOC102457778 LOC102457778 SF3B4 SF3B4 PPWD1 PPWD1 SMU1 SMU1 RBMX2 RBMX2 SNRPD3 SNRPD3 TFIP11 TFIP11 DDX42 DDX42 SNW1 SNW1 DHX40 DHX40 PRPF4 PRPF4 PLRG1 PLRG1 K7FV86_PELSI K7FV86_PELSI SF3A2 SF3A2 CCDC12 CCDC12 BUD31 BUD31 SLU7 SLU7 DDX39A DDX39A CWC15 CWC15 CWF19L2 CWF19L2 CWC25 CWC25 SYF2 SYF2 CTNNBL1 CTNNBL1 DHX16 DHX16 PPIH PPIH CDC40 CDC40 CRNKL1 CRNKL1 SF3A1 SF3A1 LOC102454152 LOC102454152 RBM22 RBM22 YJU2 YJU2 SRRM1 SRRM1 CDC5L CDC5L NCMAP NCMAP GSE1 GSE1 UBL5 UBL5 DHX15 DHX15 PRPF8 PRPF8 BUD13 BUD13 SNRPA1 SNRPA1 SNRPB SNRPB SNRPB2 SNRPB2 PRPF3 PRPF3 SNRPA SNRPA SNRPD2 SNRPD2 PRPF18 PRPF18 WDR53 WDR53 PPIE PPIE SNRPF SNRPF TCERG1L TCERG1L PPIL4 PPIL4 SNRNP40 SNRNP40 SF3B6 SF3B6 SF3B1 SF3B1 PRPF38A PRPF38A ALYREF ALYREF
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LSM10LSM10, U7 small nuclear RNA associated. (123 aa)
K7EY90_PELSIUncharacterized protein. (59 aa)
SF3B5Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
SF3B3Splicing factor 3b subunit 3. (1087 aa)
LOC102446719Uncharacterized protein. (193 aa)
HFM1SEC63 domain-containing protein. (334 aa)
K7F3C4_PELSIUncharacterized protein. (174 aa)
SART1Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP. (806 aa)
DDX23DEAD-box helicase 23; Belongs to the DEAD box helicase family. (760 aa)
SF3B2Splicing factor 3b subunit 2. (817 aa)
PPIL2Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (297 aa)
PRPF31Pre-mRNA processing factor 31. (328 aa)
WBP11Uncharacterized protein. (640 aa)
BCAS2BCAS2 pre-mRNA processing factor. (160 aa)
ZMAT2Zinc finger matrin-type 2. (123 aa)
RBM41RNA binding motif protein 41. (259 aa)
PPIL3Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (161 aa)
TXNL4BThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (149 aa)
SF3A3Splicing factor 3a subunit 3. (503 aa)
DDX46DEAD-box helicase 46. (1036 aa)
EFTUD2Elongation factor Tu GTP binding domain containing 2. (913 aa)
DDX41DEAD-box helicase 41. (475 aa)
TXNL4AThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
DHX8DEAH-box helicase 8. (1116 aa)
XAB2XPA binding protein 2. (611 aa)
DHX35DEAH-box helicase 35. (712 aa)
WBP4WW domain binding protein 4. (372 aa)
PHF5APHD finger protein 5A. (110 aa)
WDR70WD repeat domain 70. (660 aa)
ZCCHC17Zinc finger CCHC-type containing 17. (248 aa)
IKIK cytokine. (794 aa)
MFAP1Microfibril associated protein 1. (409 aa)
WDR25WD repeat domain 25. (272 aa)
PRPF19Pre-mRNA processing factor 19. (419 aa)
AQRAquarius intron-binding spliceosomal factor. (1474 aa)
SRRM3Serine/arginine repetitive matrix 3. (637 aa)
PRPF6Pre-mRNA processing factor 6. (882 aa)
K7FL04_PELSIUncharacterized protein. (649 aa)
CWC27CWC27 spliceosome associated cyclophilin. (433 aa)
K7FLB2_PELSIIg-like domain-containing protein. (319 aa)
K7FLW2_PELSIUncharacterized protein. (266 aa)
CWC22CWC22 spliceosome associated protein homolog. (896 aa)
SNRNP200Small nuclear ribonucleoprotein U5 subunit 200. (2135 aa)
NSRP1Nuclear speckle splicing regulatory protein 1. (526 aa)
SNRPESmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (91 aa)
PPIL1Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (96 aa)
SNIP1Smad nuclear interacting protein 1. (292 aa)
LOC102457778Uncharacterized protein. (282 aa)
SF3B4Splicing factor 3b subunit 4. (273 aa)
PPWD1Peptidylprolyl isomerase domain and WD repeat containing 1. (648 aa)
SMU1SMU1 DNA replication regulator and spliceosomal factor. (499 aa)
RBMX2RRM domain-containing protein. (347 aa)
SNRPD3Small nuclear ribonucleoprotein Sm D3. (126 aa)
TFIP11Tuftelin-interacting protein 11; Involved in pre-mRNA splicing, specifically in spliceosome disassembly during late-stage splicing events. Belongs to the TFP11/STIP family. (827 aa)
DDX42DEAD-box helicase 42. (824 aa)
SNW1SNW domain containing 1. (536 aa)
DHX40DEAH-box helicase 40. (792 aa)
PRPF4Pre-mRNA processing factor 4. (569 aa)
PLRG1Pleiotropic regulator 1. (517 aa)
K7FV86_PELSIHelicase C-terminal domain-containing protein. (679 aa)
SF3A2Splicing factor 3a subunit 2. (318 aa)
CCDC12Coiled-coil domain containing 12. (111 aa)
BUD31BUD31 homolog. (144 aa)
SLU7SLU7 homolog, splicing factor. (582 aa)
DDX39ADExD-box helicase 39A. (310 aa)
CWC15CWC15 spliceosome associated protein homolog. (230 aa)
CWF19L2CWF19 like cell cycle control factor 2. (883 aa)
CWC25CWC25 spliceosome associated protein homolog. (368 aa)
SYF2SYF2 pre-mRNA splicing factor. (257 aa)
CTNNBL1Catenin beta like 1. (563 aa)
DHX16DEAH-box helicase 16. (1024 aa)
PPIHPeptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (151 aa)
CDC40Cell division cycle 40. (555 aa)
CRNKL1Crooked neck pre-mRNA splicing factor 1. (687 aa)
SF3A1Splicing factor 3a subunit 1. (648 aa)
LOC102454152Uncharacterized protein. (291 aa)
RBM22RNA binding motif protein 22. (420 aa)
YJU2YJU2 splicing factor homolog. (337 aa)
SRRM1Serine and arginine repetitive matrix 1. (817 aa)
CDC5LCell division cycle 5 like. (803 aa)
NCMAPNon-compact myelin associated protein. (103 aa)
GSE1Gse1 coiled-coil protein. (1204 aa)
UBL5Uncharacterized protein. (47 aa)
DHX15DEAH-box helicase 15. (767 aa)
PRPF8Pre-mRNA processing factor 8. (2335 aa)
BUD13BUD13 homolog. (392 aa)
SNRPA1Small nuclear ribonucleoprotein polypeptide A. (185 aa)
SNRPBSmall nuclear ribonucleoprotein-associated protein. (243 aa)
SNRPB2Small nuclear ribonucleoprotein polypeptide B2. (226 aa)
PRPF3Pre-mRNA processing factor 3. (683 aa)
SNRPASmall nuclear ribonucleoprotein polypeptide A. (273 aa)
SNRPD2Small nuclear ribonucleoprotein Sm D2. (108 aa)
PRPF18SFM domain-containing protein. (342 aa)
WDR53WD repeat domain 53. (373 aa)
PPIEPeptidylprolyl isomerase E. (336 aa)
SNRPFSmall nuclear ribonucleoprotein polypeptide F. (86 aa)
TCERG1LTranscription elongation regulator 1 like. (518 aa)
PPIL4Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. (389 aa)
SNRNP40Small nuclear ribonucleoprotein U5 subunit 40. (328 aa)
SF3B6Splicing factor 3b subunit 6. (115 aa)
SF3B1Splicing factor 3b subunit 1. (1293 aa)
PRPF38APre-mRNA processing factor 38A. (312 aa)
ALYREFAly/REF export factor. (136 aa)
Your Current Organism:
Pelodiscus sinensis
NCBI taxonomy Id: 13735
Other names: Chinese soft-shelled turtle, Chinese softshell turtle, P. sinensis, Trionyx sinensis, ZMB 38
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