50 items (Pelodiscus sinensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC102463148	Uncharacterized protein. (178 aa)
	SRP54	Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily. (504 aa)
	RAB5A	RAB5A, member RAS oncogene family. (215 aa)
	RALB	RAS like proto-oncogene B. (209 aa)
	RAB31	RAB31, member RAS oncogene family. (195 aa)
	MRAS	Muscle RAS oncogene homolog. (208 aa)
	RAB22A	RAB22A, member RAS oncogene family. (194 aa)
	RRAGD	Ras related GTP binding D. (393 aa)
	TRIM23	Tripartite motif containing 23. (598 aa)
	RAB27A	RAB27A, member RAS oncogene family. (221 aa)
	MIEF1	Mitochondrial elongation factor 1. (463 aa)
	RIT2	Ras like without CAAX 2. (217 aa)
	RAB28	Uncharacterized protein. (221 aa)
	TMEM19	Transmembrane protein 19. (338 aa)
	RASL12	RAS like family 12. (274 aa)
	K7G5M9_PELSI	Uncharacterized protein. (120 aa)
	HRAS	HRas proto-oncogene, GTPase. (190 aa)
	RAB27B	RAB27B, member RAS oncogene family. (218 aa)
	RAB5C	Uncharacterized protein. (216 aa)
	ARL2	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (205 aa)
	KRAS	KRAS proto-oncogene, GTPase. (227 aa)
	RRAS2	RAS related 2. (173 aa)
	RAP1B	RAP1B, member of RAS oncogene family. (184 aa)
	RAB17	RAB17, member RAS oncogene family. (237 aa)
	RAB35	Uncharacterized protein. (193 aa)
	RALA	RAS like proto-oncogene A. (206 aa)
	RAP2A	RAP2A, member of RAS oncogene family. (184 aa)
	RASEF	RAS and EF-hand domain containing. (631 aa)
	RAB9A	RAB9A, member RAS oncogene family. (201 aa)
	RAP2B	RAP2B, member of RAS oncogene family. (192 aa)
	DIRAS2	DIRAS family GTPase 2. (199 aa)
	DIRAS3	Uncharacterized protein. (198 aa)
	ARF6	ADP ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family. (175 aa)
	RAB9B	RAB9B, member RAS oncogene family. (201 aa)
	GEM	GTP binding protein overexpressed in skeletal muscle. (296 aa)
	DIRAS1	DIRAS family GTPase 1. (223 aa)
	RAB5B	RAB5B, member RAS oncogene family. (217 aa)
	RAB29	RAB29, member RAS oncogene family. (206 aa)
	RERG	RAS like estrogen regulated growth inhibitor. (199 aa)
	RAP1A	RAP1A, member of RAS oncogene family. (184 aa)
	NRAS	NRAS proto-oncogene, GTPase. (123 aa)
	CSDE1	Cold shock domain containing E1. (471 aa)
	RAB14	RAB14, member RAS oncogene family. (215 aa)
	ARL3	ADP ribosylation factor like GTPase 3; Belongs to the small GTPase superfamily. Arf family. (182 aa)
	RRAGC	Ras related GTP binding C. (338 aa)
	DYNC1LI1	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes. (454 aa)
	RAP2C	RAP2C, member of RAS oncogene family. (134 aa)
	K7FB03_PELSI	Uncharacterized protein. (184 aa)
	K7FBX3_PELSI	Uncharacterized protein. (98 aa)
	RAB12	RAB12, member RAS oncogene family. (176 aa)

Your Current Organism:

Pelodiscus sinensis

NCBI taxonomy Id: 13735
Other names: Chinese soft-shelled turtle, Chinese softshell turtle, P. sinensis, Trionyx sinensis, ZMB 38

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARF6	K7FBX3_PELSI	ENSPSIP00000001731	ENSPSIP00000005533	ADP ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.402
ARF6	LOC102463148	ENSPSIP00000001731	ENSPSIP00000006867	ADP ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.402
ARF6	RAB35	ENSPSIP00000001731	ENSPSIP00000019555	ADP ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.402
ARL2	CSDE1	ENSPSIP00000016848	ENSPSIP00000004050	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	Cold shock domain containing E1.	0.434
ARL2	HRAS	ENSPSIP00000016848	ENSPSIP00000016513	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	HRas proto-oncogene, GTPase.	0.434
ARL2	K7G5M9_PELSI	ENSPSIP00000016848	ENSPSIP00000015590	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.434
ARL2	KRAS	ENSPSIP00000016848	ENSPSIP00000016956	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	KRAS proto-oncogene, GTPase.	0.434
ARL2	NRAS	ENSPSIP00000016848	ENSPSIP00000004046	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	NRAS proto-oncogene, GTPase.	0.434
ARL2	RALA	ENSPSIP00000016848	ENSPSIP00000019889	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	RAS like proto-oncogene A.	0.453
ARL2	RALB	ENSPSIP00000016848	ENSPSIP00000009726	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	RAS like proto-oncogene B.	0.453
ARL3	RAB28	ENSPSIP00000004180	ENSPSIP00000014213	ADP ribosylation factor like GTPase 3; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.499
CSDE1	ARL2	ENSPSIP00000004050	ENSPSIP00000016848	Cold shock domain containing E1.	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	0.434
HRAS	ARL2	ENSPSIP00000016513	ENSPSIP00000016848	HRas proto-oncogene, GTPase.	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	0.434
K7FB03_PELSI	RAB14	ENSPSIP00000005213	ENSPSIP00000004162	Uncharacterized protein.	RAB14, member RAS oncogene family.	0.498
K7FB03_PELSI	RAB17	ENSPSIP00000005213	ENSPSIP00000019191	Uncharacterized protein.	RAB17, member RAS oncogene family.	0.428
K7FB03_PELSI	RAB22A	ENSPSIP00000005213	ENSPSIP00000010974	Uncharacterized protein.	RAB22A, member RAS oncogene family.	0.415
K7FB03_PELSI	RAB31	ENSPSIP00000005213	ENSPSIP00000010047	Uncharacterized protein.	RAB31, member RAS oncogene family.	0.420
K7FB03_PELSI	RAB5A	ENSPSIP00000005213	ENSPSIP00000007889	Uncharacterized protein.	RAB5A, member RAS oncogene family.	0.408
K7FB03_PELSI	RAB5B	ENSPSIP00000005213	ENSPSIP00000003195	Uncharacterized protein.	RAB5B, member RAS oncogene family.	0.418
K7FB03_PELSI	RAB5C	ENSPSIP00000005213	ENSPSIP00000016824	Uncharacterized protein.	Uncharacterized protein.	0.407