(22 nodes) Secretory granule organization network (Pelodiscus sinensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VPS13B	Uncharacterized protein. (2155 aa)
	TBPL1	TATA-box binding protein like 1. (186 aa)
	KCNE1	Uncharacterized protein. (126 aa)
	TMF1	TATA element modulatory factor 1. (806 aa)
	AQP1	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. (271 aa)
	KNL1	Kinetochore scaffold 1. (2309 aa)
	LOC102462675	Chorein_N domain-containing protein. (1773 aa)
	BLOC1S3	Biogenesis of lysosomal organelles complex 1 subunit 3. (189 aa)
	SPACA1	Sperm acrosome associated 1. (234 aa)
	SNX19	Sorting nexin 19. (977 aa)
	ZPBP2	Zona pellucida binding protein 2. (350 aa)
	HPS4	HPS4 biogenesis of lysosomal organelles complex 3 subunit 2. (702 aa)
	AGFG2	ArfGAP with FG repeats 2. (442 aa)
	AQP5	Aquaporin 5; Belongs to the MIP/aquaporin (TC 1.A.8) family. (265 aa)
	CREB1	cAMP responsive element binding protein 1. (327 aa)
	TBC1D20	TBC1 domain family member 20. (396 aa)
	ZPBP	Zona pellucida binding protein. (268 aa)
	ACRBP	Acrosin binding protein. (535 aa)
	AGFG1	ArfGAP with FG repeats 1. (563 aa)
	SERPINE2	Serpin family E member 2; Belongs to the serpin family. (396 aa)
	SOX30	SRY-box transcription factor 30. (576 aa)
	SRGN	Serglycin. (147 aa)

Your Current Organism:

Pelodiscus sinensis

NCBI taxonomy Id: 13735
Other names: Chinese soft-shelled turtle, Chinese softshell turtle, P. sinensis, Trionyx sinensis, ZMB 38

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACRBP	ZPBP2	ENSPSIP00000017274	ENSPSIP00000010843	Acrosin binding protein.	Zona pellucida binding protein 2.	0.473
BLOC1S3	HPS4	ENSPSIP00000000447	ENSPSIP00000009996	Biogenesis of lysosomal organelles complex 1 subunit 3.	HPS4 biogenesis of lysosomal organelles complex 3 subunit 2.	0.708
HPS4	BLOC1S3	ENSPSIP00000009996	ENSPSIP00000000447	HPS4 biogenesis of lysosomal organelles complex 3 subunit 2.	Biogenesis of lysosomal organelles complex 1 subunit 3.	0.708
LOC102462675	VPS13B	ENSPSIP00000012798	ENSPSIP00000004766	Chorein_N domain-containing protein.	Uncharacterized protein.	0.510
SPACA1	ZPBP	ENSPSIP00000012533	ENSPSIP00000018462	Sperm acrosome associated 1.	Zona pellucida binding protein.	0.724
VPS13B	LOC102462675	ENSPSIP00000004766	ENSPSIP00000012798	Uncharacterized protein.	Chorein_N domain-containing protein.	0.510
ZPBP	SPACA1	ENSPSIP00000018462	ENSPSIP00000012533	Zona pellucida binding protein.	Sperm acrosome associated 1.	0.724
ZPBP2	ACRBP	ENSPSIP00000010843	ENSPSIP00000017274	Zona pellucida binding protein 2.	Acrosin binding protein.	0.473