25 items (Pelodiscus sinensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PIK3CA	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit. (1029 aa)
	K7FJ02_PELSI	Phosphatidylinositol 3-kinase catalytic subunit type 3. (787 aa)
	K7FIQ5_PELSI	PI3K-ABD domain-containing protein; Belongs to the PI3/PI4-kinase family. (211 aa)
	SELENOT	Selenoprotein T; Belongs to the SelWTH family. Selenoprotein T subfamily. (146 aa)
	PRKAA2	Non-specific serine/threonine protein kinase. (520 aa)
	ZBTB20	Zinc finger and BTB domain containing 20. (390 aa)
	GPER1	G protein-coupled estrogen receptor 1; Belongs to the G-protein coupled receptor 1 family. (369 aa)
	RAB11FIP5	RAB11 family interacting protein 5. (542 aa)
	TRA2B	Transformer 2 beta homolog. (291 aa)
	RAB11FIP2	RAB11 family interacting protein 2. (512 aa)
	PRKAA1	Non-specific serine/threonine protein kinase. (560 aa)
	GCLM	Glutamate-cysteine ligase modifier subunit. (273 aa)
	MLXIPL	MLX interacting protein like. (890 aa)
	K7GC31_PELSI	Uncharacterized protein. (433 aa)
	ZNF236	Zinc finger protein 236. (1859 aa)
	CCDC186	Coiled-coil domain containing 186. (911 aa)
	XBP1	Uncharacterized protein. (292 aa)
	CPB2	Carboxypeptidase B2. (426 aa)
	GCLC	Glutamate-cysteine ligase catalytic subunit. (537 aa)
	CYP7A1	Cytochrome P450 family 7 subfamily A member 1. (514 aa)
	ADCY8	Adenylate cyclase type 8; Catalyzes the formation of the signaling molecule cAMP in response to G-protein signaling. (1070 aa)
	PCK1	Phosphoenolpyruvate carboxykinase 1. (622 aa)
	KCNB1	Potassium voltage-gated channel subfamily B member 1; Belongs to the potassium channel family. (663 aa)
	NOX4	NADPH oxidase 4. (459 aa)
	GAS6	Growth arrest specific 6. (403 aa)

Your Current Organism:

Pelodiscus sinensis

NCBI taxonomy Id: 13735
Other names: Chinese soft-shelled turtle, Chinese softshell turtle, P. sinensis, Trionyx sinensis, ZMB 38

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GCLC	GCLM	ENSPSIP00000013994	ENSPSIP00000009058	Glutamate-cysteine ligase catalytic subunit.	Glutamate-cysteine ligase modifier subunit.	0.999
GCLM	GCLC	ENSPSIP00000009058	ENSPSIP00000013994	Glutamate-cysteine ligase modifier subunit.	Glutamate-cysteine ligase catalytic subunit.	0.999
K7FIQ5_PELSI	K7FJ02_PELSI	ENSPSIP00000007915	ENSPSIP00000008012	PI3K-ABD domain-containing protein; Belongs to the PI3/PI4-kinase family.	Phosphatidylinositol 3-kinase catalytic subunit type 3.	0.921
K7FJ02_PELSI	K7FIQ5_PELSI	ENSPSIP00000008012	ENSPSIP00000007915	Phosphatidylinositol 3-kinase catalytic subunit type 3.	PI3K-ABD domain-containing protein; Belongs to the PI3/PI4-kinase family.	0.921
K7FJ02_PELSI	PIK3CA	ENSPSIP00000008012	ENSPSIP00000016189	Phosphatidylinositol 3-kinase catalytic subunit type 3.	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit.	0.901
PIK3CA	K7FJ02_PELSI	ENSPSIP00000016189	ENSPSIP00000008012	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit.	Phosphatidylinositol 3-kinase catalytic subunit type 3.	0.901
PRKAA1	PRKAA2	ENSPSIP00000015442	ENSPSIP00000003844	Non-specific serine/threonine protein kinase.	Non-specific serine/threonine protein kinase.	0.969
PRKAA2	PRKAA1	ENSPSIP00000003844	ENSPSIP00000015442	Non-specific serine/threonine protein kinase.	Non-specific serine/threonine protein kinase.	0.969
RAB11FIP2	RAB11FIP5	ENSPSIP00000017944	ENSPSIP00000015994	RAB11 family interacting protein 2.	RAB11 family interacting protein 5.	0.935
RAB11FIP5	RAB11FIP2	ENSPSIP00000015994	ENSPSIP00000017944	RAB11 family interacting protein 5.	RAB11 family interacting protein 2.	0.935