10 items (Pelodiscus sinensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	K7EXK2_PELSI	Ubiquitin-like domain-containing protein. (32 aa)
	TRIM32	Tripartite motif containing 32. (647 aa)
	LOC102444286	Uncharacterized protein. (678 aa)
	STING1	Transmembrane protein 173. (379 aa)
	RPS27A	Ubiquitin-like domain-containing protein. (140 aa)
	UBA52	Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
	TRIM56	Tripartite motif containing 56. (585 aa)
	TREX2	Three prime repair exonuclease 2. (223 aa)
	DDX41	DEAD-box helicase 41. (475 aa)
	UBC	Uncharacterized protein. (355 aa)

Your Current Organism:

Pelodiscus sinensis

NCBI taxonomy Id: 13735
Other names: Chinese soft-shelled turtle, Chinese softshell turtle, P. sinensis, Trionyx sinensis, ZMB 38

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDX41	STING1	ENSPSIP00000005459	ENSPSIP00000014972	DEAD-box helicase 41.	Transmembrane protein 173.	0.516
DDX41	UBC	ENSPSIP00000005459	ENSPSIP00000003340	DEAD-box helicase 41.	Uncharacterized protein.	0.516
K7EXK2_PELSI	RPS27A	ENSPSIP00000000512	ENSPSIP00000014184	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.988
K7EXK2_PELSI	UBC	ENSPSIP00000000512	ENSPSIP00000003340	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.949
LOC102444286	RPS27A	ENSPSIP00000001670	ENSPSIP00000014184	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.419
LOC102444286	STING1	ENSPSIP00000001670	ENSPSIP00000014972	Uncharacterized protein.	Transmembrane protein 173.	0.537
LOC102444286	TRIM32	ENSPSIP00000001670	ENSPSIP00000001415	Uncharacterized protein.	Tripartite motif containing 32.	0.517
LOC102444286	UBC	ENSPSIP00000001670	ENSPSIP00000003340	Uncharacterized protein.	Uncharacterized protein.	0.440
RPS27A	K7EXK2_PELSI	ENSPSIP00000014184	ENSPSIP00000000512	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.988
RPS27A	LOC102444286	ENSPSIP00000014184	ENSPSIP00000001670	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.419
RPS27A	STING1	ENSPSIP00000014184	ENSPSIP00000014972	Ubiquitin-like domain-containing protein.	Transmembrane protein 173.	0.669
RPS27A	TRIM32	ENSPSIP00000014184	ENSPSIP00000001415	Ubiquitin-like domain-containing protein.	Tripartite motif containing 32.	0.511
RPS27A	TRIM56	ENSPSIP00000014184	ENSPSIP00000011096	Ubiquitin-like domain-containing protein.	Tripartite motif containing 56.	0.419
RPS27A	UBA52	ENSPSIP00000014184	ENSPSIP00000012408	Ubiquitin-like domain-containing protein.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.999
RPS27A	UBC	ENSPSIP00000014184	ENSPSIP00000003340	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.999
STING1	DDX41	ENSPSIP00000014972	ENSPSIP00000005459	Transmembrane protein 173.	DEAD-box helicase 41.	0.516
STING1	LOC102444286	ENSPSIP00000014972	ENSPSIP00000001670	Transmembrane protein 173.	Uncharacterized protein.	0.537
STING1	RPS27A	ENSPSIP00000014972	ENSPSIP00000014184	Transmembrane protein 173.	Ubiquitin-like domain-containing protein.	0.669
STING1	TRIM32	ENSPSIP00000014972	ENSPSIP00000001415	Transmembrane protein 173.	Tripartite motif containing 32.	0.671
STING1	TRIM56	ENSPSIP00000014972	ENSPSIP00000011096	Transmembrane protein 173.	Tripartite motif containing 56.	0.537