32 items (Pelodiscus sinensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CRYBB3	Crystallin beta B3; Belongs to the beta/gamma-crystallin family. (134 aa)
	SLC38A9	Solute carrier family 38 member 9. (559 aa)
	TSC2	TSC complex subunit 2. (1816 aa)
	PRKAB2	Protein kinase AMP-activated non-catalytic subunit beta 2. (274 aa)
	RRAGB	Ras related GTP binding B. (313 aa)
	STK39	Serine/threonine kinase 39. (430 aa)
	PRKAG2	Protein kinase AMP-activated non-catalytic subunit gamma 2. (564 aa)
	STRADA	STE20 related adaptor alpha. (430 aa)
	TXNDC11	Thioredoxin domain containing 11. (900 aa)
	TSC1	TSC complex subunit 1. (1168 aa)
	RHEB	Ras homolog, mTORC1 binding. (184 aa)
	RRAGD	Ras related GTP binding D. (393 aa)
	CRYGN	Crystallin gamma N; Belongs to the beta/gamma-crystallin family. (183 aa)
	LAMTOR3	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 3. (124 aa)
	MLST8	MTOR associated protein, LST8 homolog. (271 aa)
	STRADB	STE20 related adaptor beta. (416 aa)
	MTOR	Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family. (2522 aa)
	OXSR1	Protein kinase domain-containing protein. (502 aa)
	RRAGC	Ras related GTP binding C. (338 aa)
	PRKAA2	Non-specific serine/threonine protein kinase. (520 aa)
	RHEBL1	RHEB like 1. (139 aa)
	STK11	Serine/threonine kinase 11; Belongs to the protein kinase superfamily. (373 aa)
	LAMTOR1	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1. (163 aa)
	CAB39L	Calcium binding protein 39 like. (334 aa)
	RPTOR	Regulatory associated protein of MTOR complex 1. (1245 aa)
	LAMTOR5	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 5. (79 aa)
	LAMTOR4	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 4. (98 aa)
	CAB39	Calcium binding protein 39. (341 aa)
	PRKAB1	Protein kinase AMP-activated non-catalytic subunit beta 1. (263 aa)
	PRKAA1	Non-specific serine/threonine protein kinase. (560 aa)
	PPM1A	Protein phosphatase, Mg2+/Mn2+ dependent 1A. (382 aa)
	KIAA1671	KIAA1671. (2011 aa)

Your Current Organism:

Pelodiscus sinensis

NCBI taxonomy Id: 13735
Other names: Chinese soft-shelled turtle, Chinese softshell turtle, P. sinensis, Trionyx sinensis, ZMB 38

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAB39	CAB39L	ENSPSIP00000017998	ENSPSIP00000002204	Calcium binding protein 39.	Calcium binding protein 39 like.	0.901
CAB39	OXSR1	ENSPSIP00000017998	ENSPSIP00000007253	Calcium binding protein 39.	Protein kinase domain-containing protein.	0.514
CAB39	PRKAA1	ENSPSIP00000017998	ENSPSIP00000015442	Calcium binding protein 39.	Non-specific serine/threonine protein kinase.	0.952
CAB39	PRKAA2	ENSPSIP00000017998	ENSPSIP00000003844	Calcium binding protein 39.	Non-specific serine/threonine protein kinase.	0.955
CAB39	PRKAB1	ENSPSIP00000017998	ENSPSIP00000019671	Calcium binding protein 39.	Protein kinase AMP-activated non-catalytic subunit beta 1.	0.470
CAB39	PRKAB2	ENSPSIP00000017998	ENSPSIP00000014466	Calcium binding protein 39.	Protein kinase AMP-activated non-catalytic subunit beta 2.	0.415
CAB39	PRKAG2	ENSPSIP00000017998	ENSPSIP00000012822	Calcium binding protein 39.	Protein kinase AMP-activated non-catalytic subunit gamma 2.	0.449
CAB39	STK11	ENSPSIP00000017998	ENSPSIP00000002922	Calcium binding protein 39.	Serine/threonine kinase 11; Belongs to the protein kinase superfamily.	0.979
CAB39	STK39	ENSPSIP00000017998	ENSPSIP00000014037	Calcium binding protein 39.	Serine/threonine kinase 39.	0.514
CAB39	STRADA	ENSPSIP00000017998	ENSPSIP00000012744	Calcium binding protein 39.	STE20 related adaptor alpha.	0.940
CAB39	STRADB	ENSPSIP00000017998	ENSPSIP00000009197	Calcium binding protein 39.	STE20 related adaptor beta.	0.940
CAB39L	CAB39	ENSPSIP00000002204	ENSPSIP00000017998	Calcium binding protein 39 like.	Calcium binding protein 39.	0.901
CAB39L	OXSR1	ENSPSIP00000002204	ENSPSIP00000007253	Calcium binding protein 39 like.	Protein kinase domain-containing protein.	0.514
CAB39L	PRKAA1	ENSPSIP00000002204	ENSPSIP00000015442	Calcium binding protein 39 like.	Non-specific serine/threonine protein kinase.	0.952
CAB39L	PRKAA2	ENSPSIP00000002204	ENSPSIP00000003844	Calcium binding protein 39 like.	Non-specific serine/threonine protein kinase.	0.955
CAB39L	PRKAB1	ENSPSIP00000002204	ENSPSIP00000019671	Calcium binding protein 39 like.	Protein kinase AMP-activated non-catalytic subunit beta 1.	0.470
CAB39L	PRKAB2	ENSPSIP00000002204	ENSPSIP00000014466	Calcium binding protein 39 like.	Protein kinase AMP-activated non-catalytic subunit beta 2.	0.415
CAB39L	PRKAG2	ENSPSIP00000002204	ENSPSIP00000012822	Calcium binding protein 39 like.	Protein kinase AMP-activated non-catalytic subunit gamma 2.	0.449
CAB39L	STK11	ENSPSIP00000002204	ENSPSIP00000002922	Calcium binding protein 39 like.	Serine/threonine kinase 11; Belongs to the protein kinase superfamily.	0.979
CAB39L	STK39	ENSPSIP00000002204	ENSPSIP00000014037	Calcium binding protein 39 like.	Serine/threonine kinase 39.	0.514