STRINGSTRING
RUVBL1 RUVBL1 RPAP3 RPAP3 RAD23B RAD23B COPS7A COPS7A XPC XPC VWA5B2 VWA5B2 INO80D INO80D COPS3 COPS3 COPS4 COPS4 PARP1 PARP1 CUL4B CUL4B COPS8 COPS8 INO80B INO80B UBA52 UBA52 INO80C INO80C COPS2 COPS2 WDR76 WDR76 YY1 YY1 K7EXK2_PELSI K7EXK2_PELSI MCRS1 MCRS1 UBC UBC ACTR8 ACTR8 TFPT TFPT RBX1 RBX1 ACTR5 ACTR5 COPS7B COPS7B GPS1 GPS1 DDB2 DDB2 NFRKB NFRKB COPS6 COPS6 CUL4A CUL4A K7G6G0_PELSI K7G6G0_PELSI DDB1 DDB1 RAD23A RAD23A RPS27A RPS27A CETN3 CETN3 KXD1 KXD1 INO80 INO80 COPS5 COPS5
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RUVBL1RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding. (396 aa)
RPAP3RNA polymerase II associated protein 3. (720 aa)
RAD23BRAD23 homolog B, nucleotide excision repair protein. (392 aa)
COPS7ACOP9 signalosome subunit 7A. (236 aa)
XPCXPC complex subunit, DNA damage recognition and repair factor. (949 aa)
VWA5B2Von Willebrand factor A domain containing 5B2. (1274 aa)
INO80DINO80 complex subunit D. (1030 aa)
COPS3COP9 signalosome subunit 3. (423 aa)
COPS4COP9 signalosome subunit 4. (355 aa)
PARP1Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair. (975 aa)
CUL4BCullin 4B; Belongs to the cullin family. (913 aa)
COPS8COP9 signalosome subunit 8. (185 aa)
INO80BPAPA-1 domain-containing protein. (214 aa)
UBA52Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
INO80CINO80 complex subunit C. (175 aa)
COPS2COP9 signalosome subunit 2. (443 aa)
WDR76WD repeat-containing protein 76; Specifically binds 5-hydroxymethylcytosine (5hmC), suggesting that it acts as a specific reader of 5hmC. Belongs to the WD repeat DDB2/WDR76 family. (598 aa)
YY1YY1 transcription factor. (425 aa)
K7EXK2_PELSIUbiquitin-like domain-containing protein. (32 aa)
MCRS1Microspherule protein 1. (386 aa)
UBCUncharacterized protein. (355 aa)
ACTR8Actin-related protein 8; Plays an important role in the functional organization of mitotic chromosomes. Exhibits low basal ATPase activity, and unable to polymerize; Belongs to the actin family. ARP8 subfamily. (513 aa)
TFPTTCF3 fusion partner. (251 aa)
RBX1Ring-box 1. (120 aa)
ACTR5Actin related protein 5; Belongs to the actin family. (463 aa)
COPS7BCOP9 signalosome subunit 7B. (264 aa)
GPS1G protein pathway suppressor 1. (527 aa)
DDB2Damage specific DNA binding protein 2. (508 aa)
NFRKBNuclear factor related to kappaB binding protein. (1187 aa)
COPS6COP9 signalosome subunit 6. (302 aa)
CUL4ACULLIN_2 domain-containing protein; Belongs to the cullin family. (571 aa)
K7G6G0_PELSICULLIN_2 domain-containing protein; Belongs to the cullin family. (189 aa)
DDB1Damage specific DNA binding protein 1. (1124 aa)
RAD23ARAD23 homolog A, nucleotide excision repair protein. (348 aa)
RPS27AUbiquitin-like domain-containing protein. (140 aa)
CETN3Centrin 3. (167 aa)
KXD1KxDL motif containing 1. (176 aa)
INO80INO80 complex ATPase subunit. (1561 aa)
COPS5COP9 signalosome subunit 5. (337 aa)
Your Current Organism:
Pelodiscus sinensis
NCBI taxonomy Id: 13735
Other names: Chinese soft-shelled turtle, Chinese softshell turtle, P. sinensis, Trionyx sinensis, ZMB 38
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