STRINGSTRING
POLR2L POLR2L PHF3 PHF3 DDB1 DDB1 RFC2 RFC2 CCNH CCNH MEIOB MEIOB RPS27A RPS27A LIG1 LIG1 POLK POLK TCEANC TCEANC K7EXK2_PELSI K7EXK2_PELSI K7EYU4_PELSI K7EYU4_PELSI K7EZ08_PELSI K7EZ08_PELSI PCNA PCNA RCBTB1 RCBTB1 GTF2H1 GTF2H1 ERCC8 ERCC8 POLR2E POLR2E POLR2D POLR2D TCEANC2 TCEANC2 POLR2B POLR2B UBC UBC K7F822_PELSI K7F822_PELSI POLR2K POLR2K POLR2G POLR2G RPA3 RPA3 RBX1 RBX1 EP300 EP300 RFC5 RFC5 NRDE2 NRDE2 XAB2 XAB2 UVSSA UVSSA GTF2H4 GTF2H4 POLD2 POLD2 COPS7B COPS7B ERCC4 ERCC4 ZNF830 ZNF830 POLE2 POLE2 PRPF19 PRPF19 POLD3 POLD3 AQR AQR RFC3 RFC3 RFC1 RFC1 GPS1 GPS1 K7FP83_PELSI K7FP83_PELSI COPS6 COPS6 USP7 USP7 LOC102457778 LOC102457778 XPA XPA TCEA2 TCEA2 CDK7 CDK7 LOC102453643 LOC102453643 COPS2 COPS2 USP40 USP40 ERCC1 ERCC1 TCEA3 TCEA3 UBA52 UBA52 KXD1 KXD1 RCBTB2 RCBTB2 POLR2I POLR2I BIVM BIVM HMGN2 HMGN2 TCEA1 TCEA1 COPS8 COPS8 RFC4 RFC4 GTF2H3 GTF2H3 GTF2H5 GTF2H5 POLR2H POLR2H CUL4B CUL4B COPS4 COPS4 PPIE PPIE POLR2C POLR2C COPS3 COPS3 POLE POLE RPA1 RPA1 POLE3 POLE3 ERCC6 ERCC6 COPS7A COPS7A ATAD5 ATAD5 ERCC3 ERCC3 GTF2H2 GTF2H2 COPS5 COPS5 PPP1R42 PPP1R42 MNAT1 MNAT1 LIG3 LIG3 POLR2A POLR2A CUL4A CUL4A K7G6G0_PELSI K7G6G0_PELSI POLR2F POLR2F
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
POLR2LRNA polymerase II subunit L. (67 aa)
PHF3PHD finger protein 3. (1997 aa)
DDB1Damage specific DNA binding protein 1. (1124 aa)
RFC2Replication factor C subunit 2. (374 aa)
CCNHCyclin H; Belongs to the cyclin family. (363 aa)
MEIOBMeiosis specific with OB-fold. (467 aa)
RPS27AUbiquitin-like domain-containing protein. (140 aa)
LIG1DNA ligase. (954 aa)
POLKDNA polymerase kappa. (876 aa)
TCEANCTranscription elongation factor A N-terminal and central domain containing. (336 aa)
K7EXK2_PELSIUbiquitin-like domain-containing protein. (32 aa)
K7EYU4_PELSIUncharacterized protein. (249 aa)
K7EZ08_PELSIUncharacterized protein. (281 aa)
PCNAProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (262 aa)
RCBTB1RCC1 and BTB domain containing protein 1. (531 aa)
GTF2H1General transcription factor IIH subunit 1. (548 aa)
ERCC8ERCC excision repair 8, CSA ubiquitin ligase complex subunit. (396 aa)
POLR2ERNA polymerase II subunit E. (208 aa)
POLR2DRNA polymerase II subunit D. (118 aa)
TCEANC2Transcription elongation factor A N-terminal and central domain containing 2. (208 aa)
POLR2BRNA polymerase II subunit B; Belongs to the RNA polymerase beta chain family. (800 aa)
UBCUncharacterized protein. (355 aa)
K7F822_PELSIUncharacterized protein. (414 aa)
POLR2KRNA polymerase II subunit K. (58 aa)
POLR2GRNA polymerase II subunit G. (210 aa)
RPA3Replication protein A3. (119 aa)
RBX1Ring-box 1. (120 aa)
EP300E1A binding protein p300. (2399 aa)
RFC5Replication factor C subunit 5. (319 aa)
NRDE2NRDE-2, necessary for RNA interference, domain containing. (1170 aa)
XAB2XPA binding protein 2. (611 aa)
UVSSAUncharacterized protein. (716 aa)
GTF2H4General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (438 aa)
POLD2DNA polymerase delta 2, accessory subunit. (470 aa)
COPS7BCOP9 signalosome subunit 7B. (264 aa)
ERCC4ERCC excision repair 4, endonuclease catalytic subunit. (738 aa)
ZNF830Zinc finger protein 830. (326 aa)
POLE2DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (527 aa)
PRPF19Pre-mRNA processing factor 19. (419 aa)
POLD3Uncharacterized protein. (420 aa)
AQRAquarius intron-binding spliceosomal factor. (1474 aa)
RFC3Replication factor C subunit 3. (304 aa)
RFC1Replication factor C subunit 1. (1146 aa)
GPS1G protein pathway suppressor 1. (527 aa)
K7FP83_PELSIBRCT domain-containing protein. (519 aa)
COPS6COP9 signalosome subunit 6. (302 aa)
USP7Ubiquitin specific peptidase 7; Belongs to the peptidase C19 family. (1106 aa)
LOC102457778Uncharacterized protein. (282 aa)
XPAXPA, DNA damage recognition and repair factor. (226 aa)
TCEA2Transcription elongation factor A2. (273 aa)
CDK7Cyclin dependent kinase 7; Belongs to the protein kinase superfamily. (343 aa)
LOC102453643RNA polymerase II subunit J. (100 aa)
COPS2COP9 signalosome subunit 2. (443 aa)
USP40Ubiquitin specific peptidase 40; Belongs to the peptidase C19 family. (1244 aa)
ERCC1ERCC excision repair 1, endonuclease non-catalytic subunit. (275 aa)
TCEA3Transcription elongation factor A3. (337 aa)
UBA52Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
KXD1KxDL motif containing 1. (176 aa)
RCBTB2RCC1 and BTB domain containing protein 2. (552 aa)
POLR2IDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (103 aa)
BIVMUncharacterized protein. (1604 aa)
HMGN2Uncharacterized protein. (85 aa)
TCEA1Transcription elongation factor A1. (267 aa)
COPS8COP9 signalosome subunit 8. (185 aa)
RFC4Replication factor C subunit 4. (329 aa)
GTF2H3General transcription factor IIH subunit 3. (330 aa)
GTF2H5General transcription factor IIH subunit 5. (71 aa)
POLR2HRNA polymerase II subunit H. (114 aa)
CUL4BCullin 4B; Belongs to the cullin family. (913 aa)
COPS4COP9 signalosome subunit 4. (355 aa)
PPIEPeptidylprolyl isomerase E. (336 aa)
POLR2CRNA polymerase II subunit C. (272 aa)
COPS3COP9 signalosome subunit 3. (423 aa)
POLEDNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2166 aa)
RPA1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (603 aa)
POLE3CBFD_NFYB_HMF domain-containing protein. (141 aa)
ERCC6ERCC excision repair 6, chromatin remodeling factor. (1273 aa)
COPS7ACOP9 signalosome subunit 7A. (236 aa)
ATAD5ATPase family AAA domain containing 5. (1692 aa)
ERCC3ERCC excision repair 3, TFIIH core complex helicase subunit. (717 aa)
GTF2H2General transcription factor IIH subunit. (395 aa)
COPS5COP9 signalosome subunit 5. (337 aa)
PPP1R42Protein phosphatase 1 regulatory subunit 42. (303 aa)
MNAT1CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex. (309 aa)
LIG3DNA ligase. (923 aa)
POLR2ADNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1634 aa)
CUL4ACULLIN_2 domain-containing protein; Belongs to the cullin family. (571 aa)
K7G6G0_PELSICULLIN_2 domain-containing protein; Belongs to the cullin family. (189 aa)
POLR2FRNA polymerase II subunit F. (71 aa)
Your Current Organism:
Pelodiscus sinensis
NCBI taxonomy Id: 13735
Other names: Chinese soft-shelled turtle, Chinese softshell turtle, P. sinensis, Trionyx sinensis, ZMB 38
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