STRINGSTRING
RFC2 RFC2 ANKRD12 ANKRD12 ATM ATM PSMD12 PSMD12 DBF4 DBF4 NSD2 NSD2 MCM3 MCM3 ORC4 ORC4 PSMD13 PSMD13 PSMA4 PSMA4 NBN NBN DNA2 DNA2 RNF169 RNF169 RFC3 RFC3 CLSPN CLSPN MCM5 MCM5 PSMD10 PSMD10 PSMA6 PSMA6 TOPBP1 TOPBP1 RBBP8 RBBP8 TP53BP1 TP53BP1 WEE1 WEE1 PSMD7 PSMD7 PSMB3 PSMB3 BLM BLM MCM7 MCM7 MCM6 MCM6 EXD2 EXD2 CCNB1 CCNB1 CCNB2 CCNB2 PSMD3 PSMD3 RAD50 RAD50 PIEZO2 PIEZO2 PSMB2 PSMB2 MCM2 MCM2 KXD1 KXD1 PSME4 PSME4 RCBTB2 RCBTB2 ORC3 ORC3 RAD1 RAD1 YWHAE YWHAE PSMA5 PSMA5 K7G5T8_PELSI K7G5T8_PELSI PKMYT1 PKMYT1 MCM9 MCM9 SLF1 SLF1 EXO1 EXO1 RPS27A RPS27A YWHAQ YWHAQ MEIOB MEIOB K7G262_PELSI K7G262_PELSI CDK3 CDK3 HUS1 HUS1 GTSE1 GTSE1 BRCC3 BRCC3 YWHAB YWHAB PSMC6 PSMC6 TP53 TP53 WRN WRN PSMC2 PSMC2 LOC102462305 LOC102462305 TDRD3 TDRD3 PSMA1 PSMA1 RNF8 RNF8 RAD9A RAD9A MCM8 MCM8 PSMD4 PSMD4 PSMA2 PSMA2 ATR ATR RFC4 RFC4 TOP3A TOP3A CDCA7 CDCA7 K7GEW4_PELSI K7GEW4_PELSI PSMF1 PSMF1 CHEK2 CHEK2 PSMA7 PSMA7 RNF168 RNF168 CHEK1 CHEK1 PSMC4 PSMC4 ATRIP ATRIP MCM10 MCM10 PSMD9 PSMD9 RPA1 RPA1 PIAS4 PIAS4 CDK1 CDK1 WDR41 WDR41 BARD1 BARD1 RAD17 RAD17 ANKRD11 ANKRD11 UBE2V2 UBE2V2 PSMA3 PSMA3 BABAM1 BABAM1 PSMC1 PSMC1 ORC6 ORC6 SFN SFN LOC102452578 LOC102452578 LOC102453087 LOC102453087 LOC106732714 LOC106732714 K7EXN6_PELSI K7EXN6_PELSI LOC102454071 LOC102454071 LOC102445301 LOC102445301 LOC102454821 LOC102454821 ANKRD31 ANKRD31 LOC102455573 LOC102455573 LOC102455816 LOC102455816 YWHAH YWHAH LOC102444105 LOC102444105 ENSPSIP00000001420 ENSPSIP00000001420 LOC102446769 LOC102446769 LOC102448415 LOC102448415 LOC102448654 LOC102448654 ENSPSIP00000001542 ENSPSIP00000001542 LOC102450092 LOC102450092 LOC102450562 LOC102450562 LOC102450788 LOC102450788 LOC102451747 LOC102451747 LOC102451988 LOC102451988 RMI1 RMI1 RCBTB1 RCBTB1 PSMD1 PSMD1 CDC6 CDC6 K7F3C8_PELSI K7F3C8_PELSI CDC7 CDC7 PSMA8 PSMA8 PSMD6 PSMD6 CDC45 CDC45 CDK2 CDK2 RECQL4 RECQL4 UBC UBC RAD9B RAD9B PSMD11 PSMD11 PSMB6 PSMB6 YWHAZ YWHAZ K7F7E8_PELSI K7F7E8_PELSI LOC102449128 LOC102449128 ORC5 ORC5 BABAM2 BABAM2 PSMC3 PSMC3 ORC2 ORC2 PSMD14 PSMD14 RPA3 RPA3 PSMC5 PSMC5 RFC5 RFC5 UBE2N UBE2N PSMD8 PSMD8 K7FC61_PELSI K7FC61_PELSI PSMB7 PSMB7 PSMB4 PSMB4 PSMD5 PSMD5 MRE11 MRE11
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RFC2Replication factor C subunit 2. (374 aa)
ANKRD12Ankyrin repeat domain 12. (2060 aa)
ATMNon-specific serine/threonine protein kinase. (3061 aa)
PSMD12Proteasome 26S subunit, non-ATPase 12. (420 aa)
DBF4DBF4 zinc finger. (675 aa)
NSD2Nuclear receptor binding SET domain protein 2. (1365 aa)
MCM3DNA helicase; Belongs to the MCM family. (788 aa)
ORC4Origin recognition complex subunit 4; Component of the origin recognition complex (ORC) that binds origins of replication; Belongs to the ORC4 family. (436 aa)
PSMD13Proteasome 26S subunit, non-ATPase 13. (365 aa)
PSMA4Proteasome subunit alpha type. (262 aa)
NBNNibrin; Component of the MRE11-RAD50-NBN (MRN complex) which plays a critical role in the cellular response to DNA damage and the maintenance of chromosome integrity. The complex is involved in double- strand break (DSB) repair, DNA recombination, maintenance of telomere integrity, cell cycle checkpoint control and meiosis. (778 aa)
DNA2DNA replication helicase/nuclease 2. (714 aa)
RNF169Ring finger protein 169. (554 aa)
RFC3Replication factor C subunit 3. (304 aa)
CLSPNClaspin. (1345 aa)
MCM5DNA helicase; Belongs to the MCM family. (734 aa)
PSMD10Proteasome 26S subunit, non-ATPase 10. (190 aa)
PSMA6Proteasome endopeptidase complex; Belongs to the peptidase T1A family. (246 aa)
TOPBP1DNA topoisomerase II binding protein 1. (1517 aa)
RBBP8RB binding protein 8, endonuclease. (482 aa)
TP53BP1Tumor protein p53 binding protein 1. (1831 aa)
WEE1Wee1-like protein kinase. (510 aa)
PSMD7Proteasome 26S subunit, non-ATPase 7. (323 aa)
PSMB3Proteasome subunit beta. (204 aa)
BLMATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (557 aa)
MCM7DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...] (615 aa)
MCM6DNA helicase; Belongs to the MCM family. (811 aa)
EXD2Exonuclease 3'-5' domain containing 2. (621 aa)
CCNB1Cyclin B1; Belongs to the cyclin family. (410 aa)
CCNB2Cyclin B2; Belongs to the cyclin family. (400 aa)
PSMD3Proteasome 26S subunit, non-ATPase 3. (461 aa)
RAD50Zinc-hook domain-containing protein. (1304 aa)
PIEZO2Piezo-type mechanosensitive ion channel component. (2705 aa)
PSMB2Proteasome subunit beta. (171 aa)
MCM2DNA helicase; Belongs to the MCM family. (826 aa)
KXD1KxDL motif containing 1. (176 aa)
PSME4Proteasome activator subunit 4. (1837 aa)
RCBTB2RCC1 and BTB domain containing protein 2. (552 aa)
ORC3Origin recognition complex subunit 3. (724 aa)
RAD1RAD1 checkpoint DNA exonuclease. (281 aa)
YWHAETyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon; Belongs to the 14-3-3 family. (233 aa)
PSMA5Proteasome endopeptidase complex; Belongs to the peptidase T1A family. (237 aa)
K7G5T8_PELSIDNA helicase; Belongs to the MCM family. (840 aa)
PKMYT1Protein kinase, membrane associated tyrosine/threonine 1. (570 aa)
MCM9Minichromosome maintenance 9 homologous recombination repair factor; Belongs to the MCM family. (1183 aa)
SLF1SMC5-SMC6 complex localization factor 1. (1062 aa)
EXO1Exonuclease 1. (808 aa)
RPS27AUbiquitin-like domain-containing protein. (140 aa)
YWHAQTyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta; Belongs to the 14-3-3 family. (245 aa)
MEIOBMeiosis specific with OB-fold. (467 aa)
K7G262_PELSIANK_REP_REGION domain-containing protein. (93 aa)
CDK3Cyclin dependent kinase 3; Belongs to the protein kinase superfamily. (304 aa)
HUS1Checkpoint protein; Belongs to the HUS1 family. (231 aa)
GTSE1Uncharacterized protein. (455 aa)
BRCC3BRCA1/BRCA2-containing complex subunit 3. (207 aa)
YWHABTyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta; Belongs to the 14-3-3 family. (244 aa)
PSMC6Proteasome 26S subunit, ATPase 6; Belongs to the AAA ATPase family. (288 aa)
TP53Cellular tumor antigen p53; Acts as a tumor suppressor in many tumor types; induces growth arrest or apoptosis depending on the physiological circumstances and cell type. Involved in cell cycle regulation as a trans-activator that acts to negatively regulate cell division by controlling a set of genes required for this process. One of the activated genes is an inhibitor of cyclin-dependent kinases. Apoptosis induction seems to be mediated either by stimulation of BAX and FAS antigen expression, or by repression of Bcl-2 expression; Belongs to the p53 family. (390 aa)
WRNWRN RecQ like helicase. (1490 aa)
PSMC2Proteasome 26S subunit, ATPase 2; Belongs to the AAA ATPase family. (437 aa)
LOC102462305DNA helicase; Belongs to the MCM family. (812 aa)
TDRD3Tudor domain containing 3. (651 aa)
PSMA1Proteasome endopeptidase complex. (236 aa)
RNF8E3 ubiquitin-protein ligase RNF8; E3 ubiquitin-protein ligase that plays a key role in DNA damage signaling via 2 distinct roles: by mediating the 'Lys-63'-linked ubiquitination of histones H2A and H2AX and promoting the recruitment of DNA repair proteins at double-strand breaks (DSBs) sites, and by catalyzing 'Lys-48'-linked ubiquitination to remove target proteins from DNA damage sites. Following DNA DSBs, it is recruited to the sites of damage by ATM-phosphorylated MDC1 and catalyzes the 'Lys-63'-linked ubiquitination of histones H2A and H2AX, thereby promoting the formation of TP53 [...] (494 aa)
RAD9ACell cycle checkpoint control protein; Belongs to the rad9 family. (394 aa)
MCM8MCM domain-containing protein; Belongs to the MCM family. (825 aa)
PSMD4Proteasome 26S subunit, non-ATPase 4. (378 aa)
PSMA2Proteasome endopeptidase complex. (156 aa)
ATRATR serine/threonine kinase; Belongs to the PI3/PI4-kinase family. (2661 aa)
RFC4Replication factor C subunit 4. (329 aa)
TOP3ADNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (1038 aa)
CDCA7Cell division cycle associated 7. (274 aa)
K7GEW4_PELSIPiezo-type mechanosensitive ion channel component. (2540 aa)
PSMF1PI31_Prot_C domain-containing protein. (174 aa)
CHEK2Checkpoint kinase 2. (440 aa)
PSMA7Proteasome endopeptidase complex. (220 aa)
RNF168E3 ubiquitin-protein ligase RNF168; E3 ubiquitin-protein ligase required for accumulation of repair proteins to sites of DNA damage. Acts with UBE2N/UBC13 to amplify the RNF8-dependent histone ubiquitination. Recruited to sites of DNA damage at double-strand breaks (DSBs) by binding to ubiquitinated histone H2A and ubiquitinates histone H2A and H2AX, leading to amplify the RNF8-dependent H2A ubiquitination and promoting the formation of 'Lys-63'-linked ubiquitin conjugates. This leads to concentrate ubiquitinated histones H2A and H2AX at DNA lesions to the threshold required for recrui [...] (616 aa)
CHEK1Checkpoint kinase 1. (454 aa)
PSMC4Proteasome 26S subunit, ATPase 4; Belongs to the AAA ATPase family. (406 aa)
ATRIPATR interacting protein. (519 aa)
MCM10Minichromosome maintenance 10 replication initiation factor. (865 aa)
PSMD9PDZ domain-containing protein. (166 aa)
RPA1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (603 aa)
PIAS4Protein inhibitor of activated STAT 4. (493 aa)
CDK1Cyclin dependent kinase 1; Belongs to the protein kinase superfamily. (303 aa)
WDR41WD repeat domain 41. (438 aa)
BARD1BRCA1 associated RING domain 1. (691 aa)
RAD17RAD17 checkpoint clamp loader component. (690 aa)
ANKRD11ANK_REP_REGION domain-containing protein. (2723 aa)
UBE2V2Ubiquitin conjugating enzyme E2 V2. (144 aa)
PSMA3Proteasome subunit alpha type. (255 aa)
BABAM1Uncharacterized protein. (224 aa)
PSMC1Proteasome 26S subunit, ATPase 1; Belongs to the AAA ATPase family. (439 aa)
ORC6Origin recognition complex subunit 6. (272 aa)
SFNStratifin; Belongs to the 14-3-3 family. (250 aa)
LOC102452578Histone H2B; Belongs to the histone H2B family. (126 aa)
LOC102453087Histone H2B 8. (126 aa)
LOC106732714Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (94 aa)
K7EXN6_PELSIHistone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
LOC102454071Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (109 aa)
LOC102445301Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
LOC102454821Histone H2B; Belongs to the histone H2B family. (126 aa)
ANKRD31Uncharacterized protein. (300 aa)
LOC102455573Histone H2B 8. (126 aa)
LOC102455816Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
YWHAHTyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein eta; Belongs to the 14-3-3 family. (177 aa)
LOC102444105Histone H2B; Belongs to the histone H2B family. (126 aa)
ENSPSIP00000001420annotation not available (103 aa)
LOC102446769Histone H2B 8. (126 aa)
LOC102448415Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (107 aa)
LOC102448654Histone H4. (107 aa)
ENSPSIP00000001542annotation not available (103 aa)
LOC102450092Histone H4. (103 aa)
LOC102450562Histone H4. (103 aa)
LOC102450788Histone H4. (103 aa)
LOC102451747Histone H2B 1/2/3/4/6. (126 aa)
LOC102451988Histone H2B; Belongs to the histone H2B family. (126 aa)
RMI1RecQ mediated genome instability 1. (623 aa)
RCBTB1RCC1 and BTB domain containing protein 1. (531 aa)
PSMD126S proteasome non-ATPase regulatory subunit 1; Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair; Belongs to the proteasome subunit S1 family. (809 aa)
CDC6Cell division control protein; Involved in the initiation of DNA replication. Also participates in checkpoint controls that ensure DNA replication is completed before mitosis is initiated; Belongs to the CDC6/cdc18 family. (548 aa)
K7F3C8_PELSIProteasome subunit alpha type. (245 aa)
CDC7Cell division cycle 7. (569 aa)
PSMA8Proteasome endopeptidase complex. (194 aa)
PSMD6Proteasome 26S subunit, non-ATPase 6. (371 aa)
CDC45Cell division cycle 45. (596 aa)
CDK2Cyclin dependent kinase 2. (259 aa)
RECQL4Uncharacterized protein. (847 aa)
UBCUncharacterized protein. (355 aa)
RAD9BUncharacterized protein. (141 aa)
PSMD11Proteasome 26S subunit, non-ATPase 11. (393 aa)
PSMB6Proteasome subunit beta 6. (228 aa)
YWHAZTyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta; Belongs to the 14-3-3 family. (245 aa)
K7F7E8_PELSIHistone H2B; Belongs to the histone H2B family. (134 aa)
LOC102449128Histone H2B; Belongs to the histone H2B family. (134 aa)
ORC5Origin recognition complex subunit 5. (447 aa)
BABAM2BRISC and BRCA1 A complex member 2. (383 aa)
PSMC3Proteasome 26S subunit, ATPase 3; Belongs to the AAA ATPase family. (426 aa)
ORC2Origin recognition complex subunit 2. (585 aa)
PSMD14Proteasome 26S subunit, non-ATPase 14. (310 aa)
RPA3Replication protein A3. (119 aa)
PSMC5Proteasome 26S subunit, ATPase 5. (228 aa)
RFC5Replication factor C subunit 5. (319 aa)
UBE2NUBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (152 aa)
PSMD8Proteasome 26S subunit, non-ATPase 8. (244 aa)
K7FC61_PELSIBRCT_assoc domain-containing protein. (1048 aa)
PSMB7Proteasome subunit beta. (277 aa)
PSMB4Proteasome subunit beta; Belongs to the peptidase T1B family. (230 aa)
PSMD5Proteasome 26S subunit, non-ATPase 5. (453 aa)
MRE11Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. (714 aa)
Your Current Organism:
Pelodiscus sinensis
NCBI taxonomy Id: 13735
Other names: Chinese soft-shelled turtle, Chinese softshell turtle, P. sinensis, Trionyx sinensis, ZMB 38
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