59 items (Pelodiscus sinensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RAB6B	RAB6B, member RAS oncogene family. (141 aa)
	K7EXU8_PELSI	Uncharacterized protein. (82 aa)
	RAB3A	RAB3A, member RAS oncogene family. (228 aa)
	RAB44	Uncharacterized protein. (155 aa)
	RAB4A	RAB4A, member RAS oncogene family. (220 aa)
	RAB5B	RAB5B, member RAS oncogene family. (217 aa)
	RAB29	RAB29, member RAS oncogene family. (206 aa)
	RAB1B	RAB1B, member RAS oncogene family. (56 aa)
	RAB14	RAB14, member RAS oncogene family. (215 aa)
	K7FBX3_PELSI	Uncharacterized protein. (98 aa)
	GAREM1	GRB2 associated regulator of MAPK1 subtype 1. (887 aa)
	K7FCY5_PELSI	Uncharacterized protein. (161 aa)
	RAB26	RAB26, member RAS oncogene family. (208 aa)
	PTP4A2	Protein tyrosine phosphatase 4A2. (215 aa)
	RAB8B	RAB8B, member RAS oncogene family. (183 aa)
	LOC102456424	Uncharacterized protein. (201 aa)
	RAB3C	RAB3C, member RAS oncogene family. (227 aa)
	RABL6	RAB, member RAS oncogene family like 6. (738 aa)
	RAB42	RAB42, member RAS oncogene family. (223 aa)
	RAB40C	RAB40C, member RAS oncogene family. (281 aa)
	RAB5A	RAB5A, member RAS oncogene family. (215 aa)
	ZHX2	Zinc fingers and homeoboxes 2. (832 aa)
	RAB8A	RAB8A, member RAS oncogene family. (180 aa)
	RAB1A	RAB1A, member RAS oncogene family. (205 aa)
	PTP4A3	Protein tyrosine phosphatase 4A3. (173 aa)
	RAB19	RAB19, member RAS oncogene family. (215 aa)
	RAB2B	RAB2B, member RAS oncogene family. (181 aa)
	RAB3B	Uncharacterized protein. (124 aa)
	RAB39B	RAB39B, member RAS oncogene family. (213 aa)
	CGNL1	Cingulin like 1. (1296 aa)
	RAB36	RAB36, member RAS oncogene family. (266 aa)
	FAM189B	Uncharacterized protein. (216 aa)
	RAB22A	RAB22A, member RAS oncogene family. (194 aa)
	DNAJC27	DnaJ heat shock protein family (Hsp40) member C27. (273 aa)
	RAB41	RAB41, member RAS oncogene family. (193 aa)
	RAB15	RAB15, member RAS oncogene family. (178 aa)
	RABGGTB	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX. (331 aa)
	PTAR1	Protein prenyltransferase alpha subunit repeat containing 1. (383 aa)
	RAB3D	RAB3D, member RAS oncogene family. (199 aa)
	FAM189A2	Family with sequence similarity 189 member A2. (450 aa)
	RAB2A	RAB2A, member RAS oncogene family. (212 aa)
	PTER	Phosphotriesterase related. (349 aa)
	RAB40B	RAB40B, member RAS oncogene family. (278 aa)
	RAB28	Uncharacterized protein. (221 aa)
	RAB25	RAB25, member RAS oncogene family. (212 aa)
	PTP4A1	Protein tyrosine phosphatase 4A1. (173 aa)
	LOC102458629	Uncharacterized protein. (214 aa)
	RAB32	RAB32, member RAS oncogene family. (218 aa)
	LOC102453896	Uncharacterized protein. (225 aa)
	RAB6A	RAB6A, member RAS oncogene family. (185 aa)
	RAB5C	Uncharacterized protein. (216 aa)
	K7GAD3_PELSI	Uncharacterized protein. (212 aa)
	RAB20	RAB20, member RAS oncogene family. (234 aa)
	RAB23	RAB23, member RAS oncogene family. (237 aa)
	RAB38	RAB38, member RAS oncogene family. (212 aa)
	RAB17	RAB17, member RAS oncogene family. (237 aa)
	RASEF	RAS and EF-hand domain containing. (631 aa)
	FAM189A1	Family with sequence similarity 189 member A1. (619 aa)
	RAB10	RAB10, member RAS oncogene family. (137 aa)

Your Current Organism:

Pelodiscus sinensis

NCBI taxonomy Id: 13735
Other names: Chinese soft-shelled turtle, Chinese softshell turtle, P. sinensis, Trionyx sinensis, ZMB 38

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CGNL1	LOC102453896	ENSPSIP00000010453	ENSPSIP00000015809	Cingulin like 1.	Uncharacterized protein.	0.435
CGNL1	PTAR1	ENSPSIP00000010453	ENSPSIP00000012063	Cingulin like 1.	Protein prenyltransferase alpha subunit repeat containing 1.	0.582
CGNL1	RAB25	ENSPSIP00000010453	ENSPSIP00000014549	Cingulin like 1.	RAB25, member RAS oncogene family.	0.435
CGNL1	RAB36	ENSPSIP00000010453	ENSPSIP00000010564	Cingulin like 1.	RAB36, member RAS oncogene family.	0.454
CGNL1	RAB41	ENSPSIP00000010453	ENSPSIP00000011050	Cingulin like 1.	RAB41, member RAS oncogene family.	0.454
CGNL1	RAB6A	ENSPSIP00000010453	ENSPSIP00000016164	Cingulin like 1.	RAB6A, member RAS oncogene family.	0.454
CGNL1	RAB6B	ENSPSIP00000010453	ENSPSIP00000018391	Cingulin like 1.	RAB6B, member RAS oncogene family.	0.454
CGNL1	RABGGTB	ENSPSIP00000010453	ENSPSIP00000012023	Cingulin like 1.	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	0.675
DNAJC27	PTAR1	ENSPSIP00000011021	ENSPSIP00000012063	DnaJ heat shock protein family (Hsp40) member C27.	Protein prenyltransferase alpha subunit repeat containing 1.	0.567
DNAJC27	RAB14	ENSPSIP00000011021	ENSPSIP00000004162	DnaJ heat shock protein family (Hsp40) member C27.	RAB14, member RAS oncogene family.	0.411
DNAJC27	RABGGTB	ENSPSIP00000011021	ENSPSIP00000012023	DnaJ heat shock protein family (Hsp40) member C27.	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	0.652
FAM189A1	RABGGTB	ENSPSIP00000020249	ENSPSIP00000012023	Family with sequence similarity 189 member A1.	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	0.463
FAM189A2	RABGGTB	ENSPSIP00000012809	ENSPSIP00000012023	Family with sequence similarity 189 member A2.	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	0.463
FAM189B	RABGGTB	ENSPSIP00000010718	ENSPSIP00000012023	Uncharacterized protein.	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	0.463
GAREM1	K7GAD3_PELSI	ENSPSIP00000005884	ENSPSIP00000017244	GRB2 associated regulator of MAPK1 subtype 1.	Uncharacterized protein.	0.410
GAREM1	LOC102458629	ENSPSIP00000005884	ENSPSIP00000015066	GRB2 associated regulator of MAPK1 subtype 1.	Uncharacterized protein.	0.591
GAREM1	RAB1A	ENSPSIP00000005884	ENSPSIP00000008820	GRB2 associated regulator of MAPK1 subtype 1.	RAB1A, member RAS oncogene family.	0.591
GAREM1	RAB4A	ENSPSIP00000005884	ENSPSIP00000002963	GRB2 associated regulator of MAPK1 subtype 1.	RAB4A, member RAS oncogene family.	0.410
GAREM1	RABGGTB	ENSPSIP00000005884	ENSPSIP00000012023	GRB2 associated regulator of MAPK1 subtype 1.	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	0.609
K7EXU8_PELSI	K7FBX3_PELSI	ENSPSIP00000000608	ENSPSIP00000005533	Uncharacterized protein.	Uncharacterized protein.	0.414