56 items (Pelodiscus sinensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RAB39A	RAB39A, member RAS oncogene family. (213 aa)
	RAB9A	RAB9A, member RAS oncogene family. (201 aa)
	RAB9B	RAB9B, member RAS oncogene family. (201 aa)
	RAB3A	RAB3A, member RAS oncogene family. (228 aa)
	RAB44	Uncharacterized protein. (155 aa)
	RAB4A	RAB4A, member RAS oncogene family. (220 aa)
	RAB5B	RAB5B, member RAS oncogene family. (217 aa)
	RAB30	RAB30, member RAS oncogene family. (203 aa)
	RAB29	RAB29, member RAS oncogene family. (206 aa)
	RAB7B	RAB7B, member RAS oncogene family. (200 aa)
	RAB19	RAB19, member RAS oncogene family. (215 aa)
	RAB2B	RAB2B, member RAS oncogene family. (181 aa)
	RAB31	RAB31, member RAS oncogene family. (195 aa)
	RAB39B	RAB39B, member RAS oncogene family. (213 aa)
	RAB36	RAB36, member RAS oncogene family. (266 aa)
	RAB22A	RAB22A, member RAS oncogene family. (194 aa)
	RAB41	RAB41, member RAS oncogene family. (193 aa)
	RAB15	RAB15, member RAS oncogene family. (178 aa)
	RAB11B	Uncharacterized protein. (257 aa)
	RAB27A	RAB27A, member RAS oncogene family. (221 aa)
	RAB3D	RAB3D, member RAS oncogene family. (199 aa)
	RAB7A	RAB7A, member RAS oncogene family. (207 aa)
	RAB11A	RAB11A, member RAS oncogene family. (236 aa)
	RAB2A	RAB2A, member RAS oncogene family. (212 aa)
	RAB40B	RAB40B, member RAS oncogene family. (278 aa)
	K7G1L6_PELSI	Uncharacterized protein. (171 aa)
	RAB25	RAB25, member RAS oncogene family. (212 aa)
	LOC102463951	Uncharacterized protein. (216 aa)
	LOC102458629	Uncharacterized protein. (214 aa)
	RAB32	RAB32, member RAS oncogene family. (218 aa)
	RAB6A	RAB6A, member RAS oncogene family. (185 aa)
	RAB27B	RAB27B, member RAS oncogene family. (218 aa)
	RAB5C	Uncharacterized protein. (216 aa)
	K7GAD3_PELSI	Uncharacterized protein. (212 aa)
	RAB23	RAB23, member RAS oncogene family. (237 aa)
	RAB38	RAB38, member RAS oncogene family. (212 aa)
	RAB17	RAB17, member RAS oncogene family. (237 aa)
	RAB35	Uncharacterized protein. (193 aa)
	RASEF	RAS and EF-hand domain containing. (631 aa)
	RAB10	RAB10, member RAS oncogene family. (137 aa)
	RAB14	RAB14, member RAS oncogene family. (215 aa)
	RAB37	RAB37, member RAS oncogene family. (192 aa)
	K7FB03_PELSI	Uncharacterized protein. (184 aa)
	RAB12	RAB12, member RAS oncogene family. (176 aa)
	K7FCY5_PELSI	Uncharacterized protein. (161 aa)
	RAB26	RAB26, member RAS oncogene family. (208 aa)
	LOC102463148	Uncharacterized protein. (178 aa)
	RAB8B	RAB8B, member RAS oncogene family. (183 aa)
	LOC102456424	Uncharacterized protein. (201 aa)
	RAB3C	RAB3C, member RAS oncogene family. (227 aa)
	RAB42	RAB42, member RAS oncogene family. (223 aa)
	RAB40C	RAB40C, member RAS oncogene family. (281 aa)
	RAB5A	RAB5A, member RAS oncogene family. (215 aa)
	RAB8A	RAB8A, member RAS oncogene family. (180 aa)
	RAB1A	RAB1A, member RAS oncogene family. (205 aa)
	K7FNM6_PELSI	Uncharacterized protein. (195 aa)

Your Current Organism:

Pelodiscus sinensis

NCBI taxonomy Id: 13735
Other names: Chinese soft-shelled turtle, Chinese softshell turtle, P. sinensis, Trionyx sinensis, ZMB 38

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
K7FB03_PELSI	K7GAD3_PELSI	ENSPSIP00000005213	ENSPSIP00000017244	Uncharacterized protein.	Uncharacterized protein.	0.437
K7FB03_PELSI	LOC102458629	ENSPSIP00000005213	ENSPSIP00000015066	Uncharacterized protein.	Uncharacterized protein.	0.430
K7FB03_PELSI	RAB14	ENSPSIP00000005213	ENSPSIP00000004162	Uncharacterized protein.	RAB14, member RAS oncogene family.	0.498
K7FB03_PELSI	RAB17	ENSPSIP00000005213	ENSPSIP00000019191	Uncharacterized protein.	RAB17, member RAS oncogene family.	0.428
K7FB03_PELSI	RAB19	ENSPSIP00000005213	ENSPSIP00000010037	Uncharacterized protein.	RAB19, member RAS oncogene family.	0.544
K7FB03_PELSI	RAB1A	ENSPSIP00000005213	ENSPSIP00000008820	Uncharacterized protein.	RAB1A, member RAS oncogene family.	0.425
K7FB03_PELSI	RAB22A	ENSPSIP00000005213	ENSPSIP00000010974	Uncharacterized protein.	RAB22A, member RAS oncogene family.	0.415
K7FB03_PELSI	RAB2A	ENSPSIP00000005213	ENSPSIP00000013335	Uncharacterized protein.	RAB2A, member RAS oncogene family.	0.477
K7FB03_PELSI	RAB2B	ENSPSIP00000005213	ENSPSIP00000010039	Uncharacterized protein.	RAB2B, member RAS oncogene family.	0.484
K7FB03_PELSI	RAB30	ENSPSIP00000005213	ENSPSIP00000003210	Uncharacterized protein.	RAB30, member RAS oncogene family.	0.482
K7FB03_PELSI	RAB31	ENSPSIP00000005213	ENSPSIP00000010047	Uncharacterized protein.	RAB31, member RAS oncogene family.	0.420
K7FB03_PELSI	RAB36	ENSPSIP00000005213	ENSPSIP00000010564	Uncharacterized protein.	RAB36, member RAS oncogene family.	0.563
K7FB03_PELSI	RAB41	ENSPSIP00000005213	ENSPSIP00000011050	Uncharacterized protein.	RAB41, member RAS oncogene family.	0.566
K7FB03_PELSI	RAB4A	ENSPSIP00000005213	ENSPSIP00000002963	Uncharacterized protein.	RAB4A, member RAS oncogene family.	0.413
K7FB03_PELSI	RAB5A	ENSPSIP00000005213	ENSPSIP00000007889	Uncharacterized protein.	RAB5A, member RAS oncogene family.	0.408
K7FB03_PELSI	RAB5B	ENSPSIP00000005213	ENSPSIP00000003195	Uncharacterized protein.	RAB5B, member RAS oncogene family.	0.418
K7FB03_PELSI	RAB5C	ENSPSIP00000005213	ENSPSIP00000016824	Uncharacterized protein.	Uncharacterized protein.	0.407
K7FB03_PELSI	RAB6A	ENSPSIP00000005213	ENSPSIP00000016164	Uncharacterized protein.	RAB6A, member RAS oncogene family.	0.563
K7FB03_PELSI	RAB7B	ENSPSIP00000005213	ENSPSIP00000003557	Uncharacterized protein.	RAB7B, member RAS oncogene family.	0.485
K7FB03_PELSI	RAB9A	ENSPSIP00000005213	ENSPSIP00000000471	Uncharacterized protein.	RAB9A, member RAS oncogene family.	0.507