20 items (Methanobacterium sp. MB1) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CDG65870.1	Putative protein MTH_1235; High confidence in function and specificity. (218 aa)
	CDG65873.1	Hypothetical protein; Family membership. (372 aa)
	CDG66115.1	Hypothetical protein; Family membership. (981 aa)
	CDG64277.1	Signal transduction histidine kinase; High confidence in function and specificity. (472 aa)
	CDG64526.1	Putative PAS/PAC sensor protein; High confidence in function and specificity. (158 aa)
	CDG64824.1	Sensory transduction regulatory protein; High confidence in function and specificity. (578 aa)
	CDG64825.1	Hypothetical protein; Family membership. (111 aa)
	CDG64830.1	Hypothetical protein; Family membership. (1113 aa)
	CDG64952.1	Hypothetical protein; Family membership. (128 aa)
	CDG64973.1	Putative PAS/PAC sensor protein; High confidence in function and specificity. (306 aa)
	CDG64974.1	Response regulator receiver protein; High confidence in function and specificity. (151 aa)
	CDG65082.1	Hypothetical protein; Family membership. (417 aa)
	CDG65293.1	PAS/PAC sensor protein; High confidence in function and specificity. (425 aa)
	CDG65299.1	Response regulator receiver protein; High confidence in function and specificity. (148 aa)
	CDG65300.1	Sensory transduction regulatory protein; High confidence in function and specificity. (588 aa)
	CDG64136.1	PAS/PAC sensor protein; High confidence in function and specificity. (245 aa)
	CDG65301.1	Response regulator receiver protein; High confidence in function and specificity. (291 aa)
	CDG65499.1	Hypothetical protein; Family membership. (79 aa)
	CDG65500.1	Hypothetical protein; Family membership. (47 aa)
	CDG64137.1	Hypothetical protein; Family membership. (102 aa)

Your Current Organism:

Methanobacterium sp. MB1

NCBI taxonomy Id: 1379702
Other names: M. sp. MB1

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDG64136.1	CDG64137.1	MBMB1_0016	MBMB1_0017	PAS/PAC sensor protein; High confidence in function and specificity.	Hypothetical protein; Family membership.	0.623
CDG64136.1	CDG64277.1	MBMB1_0016	MBMB1_0158	PAS/PAC sensor protein; High confidence in function and specificity.	Signal transduction histidine kinase; High confidence in function and specificity.	0.627
CDG64136.1	CDG64952.1	MBMB1_0016	MBMB1_0849	PAS/PAC sensor protein; High confidence in function and specificity.	Hypothetical protein; Family membership.	0.424
CDG64136.1	CDG65300.1	MBMB1_0016	MBMB1_1200	PAS/PAC sensor protein; High confidence in function and specificity.	Sensory transduction regulatory protein; High confidence in function and specificity.	0.615
CDG64137.1	CDG64136.1	MBMB1_0017	MBMB1_0016	Hypothetical protein; Family membership.	PAS/PAC sensor protein; High confidence in function and specificity.	0.623
CDG64137.1	CDG64277.1	MBMB1_0017	MBMB1_0158	Hypothetical protein; Family membership.	Signal transduction histidine kinase; High confidence in function and specificity.	0.494
CDG64137.1	CDG64952.1	MBMB1_0017	MBMB1_0849	Hypothetical protein; Family membership.	Hypothetical protein; Family membership.	0.424
CDG64137.1	CDG65300.1	MBMB1_0017	MBMB1_1200	Hypothetical protein; Family membership.	Sensory transduction regulatory protein; High confidence in function and specificity.	0.494
CDG64277.1	CDG64136.1	MBMB1_0158	MBMB1_0016	Signal transduction histidine kinase; High confidence in function and specificity.	PAS/PAC sensor protein; High confidence in function and specificity.	0.627
CDG64277.1	CDG64137.1	MBMB1_0158	MBMB1_0017	Signal transduction histidine kinase; High confidence in function and specificity.	Hypothetical protein; Family membership.	0.494
CDG64277.1	CDG64526.1	MBMB1_0158	MBMB1_0416	Signal transduction histidine kinase; High confidence in function and specificity.	Putative PAS/PAC sensor protein; High confidence in function and specificity.	0.680
CDG64277.1	CDG64825.1	MBMB1_0158	MBMB1_0721	Signal transduction histidine kinase; High confidence in function and specificity.	Hypothetical protein; Family membership.	0.683
CDG64277.1	CDG65082.1	MBMB1_0158	MBMB1_0980	Signal transduction histidine kinase; High confidence in function and specificity.	Hypothetical protein; Family membership.	0.472
CDG64277.1	CDG65293.1	MBMB1_0158	MBMB1_1193	Signal transduction histidine kinase; High confidence in function and specificity.	PAS/PAC sensor protein; High confidence in function and specificity.	0.657
CDG64277.1	CDG65299.1	MBMB1_0158	MBMB1_1199	Signal transduction histidine kinase; High confidence in function and specificity.	Response regulator receiver protein; High confidence in function and specificity.	0.447
CDG64277.1	CDG65301.1	MBMB1_0158	MBMB1_1201	Signal transduction histidine kinase; High confidence in function and specificity.	Response regulator receiver protein; High confidence in function and specificity.	0.666
CDG64277.1	CDG65873.1	MBMB1_0158	MBMB1_1794	Signal transduction histidine kinase; High confidence in function and specificity.	Hypothetical protein; Family membership.	0.711
CDG64526.1	CDG64277.1	MBMB1_0416	MBMB1_0158	Putative PAS/PAC sensor protein; High confidence in function and specificity.	Signal transduction histidine kinase; High confidence in function and specificity.	0.680
CDG64526.1	CDG64952.1	MBMB1_0416	MBMB1_0849	Putative PAS/PAC sensor protein; High confidence in function and specificity.	Hypothetical protein; Family membership.	0.424
CDG64526.1	CDG65300.1	MBMB1_0416	MBMB1_1200	Putative PAS/PAC sensor protein; High confidence in function and specificity.	Sensory transduction regulatory protein; High confidence in function and specificity.	0.668