(19 nodes) Mixed, incl. Domain of unknown function DUF1549, and Protein of unknown function DUF1501 network (Spirosoma radiotolerans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AKD54254.1	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1061 aa)
	AKD54255.1	Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (299 aa)
	AKD54364.1	G-D-S-L family lipolytic protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (310 aa)
	AKD56587.1	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (385 aa)
	AKD56588.1	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (343 aa)
	AKD56589.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (405 aa)
	AKD56590.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (353 aa)
	AKD56591.1	Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (259 aa)
	AKD56592.1	Heme-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (900 aa)
	AKD56699.1	Alpha integrin; Derived by automated computational analysis using gene prediction method: Protein Homology. (379 aa)
	AKD58678.1	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (280 aa)
	AKD57236.1	Stress responsive protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (135 aa)
	AKD58743.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (371 aa)
	AKD57372.1	Sulfatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (484 aa)
	AKD57373.1	Derived by automated computational analysis using gene prediction method: Protein Homology. (1164 aa)
	AKD57376.1	Peptidylglycine monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (356 aa)
	AKD58045.1	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1025 aa)
	AKD58101.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (931 aa)
	AKD58102.1	Sulfatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (501 aa)

Your Current Organism:

Spirosoma radiotolerans

NCBI taxonomy Id: 1379870
Other names: JCM 19447, KCTC 32455, S. radiotolerans, Spirosoma radiotolerans Lee et al. 2017, Spirosoma sp. DG5A, strain DG5A

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKD54254.1	AKD54255.1	SD10_04380	SD10_04385	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.976
AKD54254.1	AKD54364.1	SD10_04380	SD10_04990	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	G-D-S-L family lipolytic protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.579
AKD54254.1	AKD56588.1	SD10_04380	SD10_18430	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.689
AKD54254.1	AKD56589.1	SD10_04380	SD10_18435	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.445
AKD54254.1	AKD56590.1	SD10_04380	SD10_18440	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.479
AKD54254.1	AKD56591.1	SD10_04380	SD10_18445	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.696
AKD54254.1	AKD56592.1	SD10_04380	SD10_18450	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Heme-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.769
AKD54254.1	AKD56699.1	SD10_04380	SD10_19135	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha integrin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.651
AKD54254.1	AKD57376.1	SD10_04380	SD10_23275	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidylglycine monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.572
AKD54254.1	AKD58678.1	SD10_04380	SD10_20405	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.478
AKD54254.1	AKD58743.1	SD10_04380	SD10_22970	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.609
AKD54255.1	AKD54254.1	SD10_04385	SD10_04380	Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.976
AKD54255.1	AKD54364.1	SD10_04385	SD10_04990	Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	G-D-S-L family lipolytic protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.615
AKD54255.1	AKD56588.1	SD10_04385	SD10_18430	Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.724
AKD54255.1	AKD56589.1	SD10_04385	SD10_18435	Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.521
AKD54255.1	AKD56590.1	SD10_04385	SD10_18440	Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.529
AKD54255.1	AKD56591.1	SD10_04385	SD10_18445	Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.677
AKD54255.1	AKD56592.1	SD10_04385	SD10_18450	Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Heme-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.753
AKD54255.1	AKD56699.1	SD10_04385	SD10_19135	Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha integrin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.702
AKD54255.1	AKD58045.1	SD10_04385	SD10_27215	Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.668