(28 nodes) Xylose isomerase-like, TIM barrel domain network (Spirosoma radiotolerans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AKD56739.1	Hydroxypyruvate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (292 aa)
	AKD53886.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (278 aa)
	AKD58315.1	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (311 aa)
	AKD54203.1	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (352 aa)
	AKD54253.1	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (276 aa)
	AKD58360.1	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (291 aa)
	AKD54546.1	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (289 aa)
	AKD54686.1	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (302 aa)
	AKD54703.1	Sugar phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (287 aa)
	AKD58434.1	Endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (317 aa)
	AKD58479.1	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (293 aa)
	AKD55641.1	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (296 aa)
	AKD55746.1	Sugar isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (424 aa)
	AKD55794.1	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (287 aa)
	AKD58566.1	AP-endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (304 aa)
	AKD56320.1	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (321 aa)
	AKD56545.1	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (308 aa)
	AKD56588.1	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (343 aa)
	AKD58628.1	Endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (284 aa)
	AKD56681.1	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (312 aa)
	AKD56711.1	AP endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (350 aa)
	AKD56759.1	Sugar phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (281 aa)
	AKD58678.1	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (280 aa)
	AKD57089.1	Sugar phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (279 aa)
	AKD57195.1	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (341 aa)
	AKD57695.1	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (314 aa)
	AKD57707.1	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (314 aa)
	AKD58044.1	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (285 aa)

Your Current Organism:

Spirosoma radiotolerans

NCBI taxonomy Id: 1379870
Other names: JCM 19447, KCTC 32455, S. radiotolerans, Spirosoma radiotolerans Lee et al. 2017, Spirosoma sp. DG5A, strain DG5A

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKD54203.1	AKD58315.1	SD10_04050	SD10_03965	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.742
AKD54253.1	AKD55794.1	SD10_04375	SD10_13670	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
AKD54253.1	AKD56681.1	SD10_04375	SD10_19015	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.925
AKD54253.1	AKD57707.1	SD10_04375	SD10_25250	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
AKD54546.1	AKD56711.1	SD10_06100	SD10_19210	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	AP endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.433
AKD54686.1	AKD58628.1	SD10_06955	SD10_18500	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.438
AKD55641.1	AKD56711.1	SD10_12765	SD10_19210	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	AP endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.466
AKD55794.1	AKD54253.1	SD10_13670	SD10_04375	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
AKD55794.1	AKD56588.1	SD10_13670	SD10_18430	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.433
AKD55794.1	AKD56681.1	SD10_13670	SD10_19015	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.917
AKD55794.1	AKD57707.1	SD10_13670	SD10_25250	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
AKD56588.1	AKD55794.1	SD10_18430	SD10_13670	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.433
AKD56588.1	AKD58360.1	SD10_18430	SD10_05995	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.415
AKD56588.1	AKD58678.1	SD10_18430	SD10_20405	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.701
AKD56681.1	AKD54253.1	SD10_19015	SD10_04375	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.925
AKD56681.1	AKD55794.1	SD10_19015	SD10_13670	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.917
AKD56681.1	AKD57707.1	SD10_19015	SD10_25250	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.911
AKD56711.1	AKD54546.1	SD10_19210	SD10_06100	AP endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.433
AKD56711.1	AKD55641.1	SD10_19210	SD10_12765	AP endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.466
AKD56739.1	AKD57695.1	SD10_19365	SD10_25190	Hydroxypyruvate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.912