(21 nodes) Starch and sucrose metabolism network (Rufibacter sp. DG15C)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AMM50215.1	Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (709 aa)
	AMM50315.1	Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (755 aa)
	AMM52713.1	Trehalose-6-phosphate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (726 aa)
	AMM50429.1	beta-D-glucoside glucohydrolase; Catalyzes the hydrolysis of terminal beta-D-glucosyl residues; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 3 family. (779 aa)
	AMM50697.1	Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (727 aa)
	AMM52796.1	Glycogen synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (270 aa)
	pgi	Glucose-6-phosphate isomerase; Functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GPI family. (551 aa)
	AMM52323.1	Malto-oligosyltrehalose trehalohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (614 aa)
	AMM52324.1	Glycogen debranching protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 13 family. (718 aa)
	AMM52465.1	Glucokinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (325 aa)
	AMM52467.1	Beta-phosphoglucomutase; Derived by automated computational analysis using gene prediction method: Protein Homology. (218 aa)
	AMM52468.1	Maltose phosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (772 aa)
	AMM53019.1	Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (593 aa)
	AMM52471.1	Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (522 aa)
	AMM53020.1	Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (438 aa)
	AMM52476.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 13 family. (927 aa)
	AMM52477.1	1,4-alpha-glucan branching protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (673 aa)
	AMM52478.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (442 aa)
	AMM52479.1	Glycogen synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (596 aa)
	AMM52501.1	Phosphoglucomutase; Derived by automated computational analysis using gene prediction method: Protein Homology. (582 aa)
	AMM53044.1	Trehalase; Derived by automated computational analysis using gene prediction method: Protein Homology. (503 aa)

Your Current Organism:

Rufibacter sp. DG15C

NCBI taxonomy Id: 1379909
Other names: R. sp. DG15C

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMM50215.1	AMM50697.1	TH61_02165	TH61_05215	Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.902
AMM50215.1	AMM52324.1	TH61_02165	TH61_15580	Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycogen debranching protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 13 family.	0.903
AMM50215.1	AMM52471.1	TH61_02165	TH61_16540	Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.903
AMM50215.1	AMM52476.1	TH61_02165	TH61_16580	Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 13 family.	0.936
AMM50215.1	AMM52477.1	TH61_02165	TH61_16585	Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	1,4-alpha-glucan branching protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
AMM50215.1	AMM53019.1	TH61_02165	TH61_16535	Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.914
AMM50215.1	AMM53020.1	TH61_02165	TH61_16550	Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.932
AMM50315.1	AMM50429.1	TH61_02755	TH61_03455	Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	beta-D-glucoside glucohydrolase; Catalyzes the hydrolysis of terminal beta-D-glucosyl residues; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 3 family.	0.904
AMM50429.1	AMM50315.1	TH61_03455	TH61_02755	beta-D-glucoside glucohydrolase; Catalyzes the hydrolysis of terminal beta-D-glucosyl residues; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 3 family.	Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.904
AMM50697.1	AMM50215.1	TH61_05215	TH61_02165	Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.902
AMM50697.1	AMM52324.1	TH61_05215	TH61_15580	Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycogen debranching protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 13 family.	0.903
AMM50697.1	AMM52471.1	TH61_05215	TH61_16540	Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.903
AMM50697.1	AMM52476.1	TH61_05215	TH61_16580	Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 13 family.	0.932
AMM50697.1	AMM52477.1	TH61_05215	TH61_16585	Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	1,4-alpha-glucan branching protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
AMM50697.1	AMM53019.1	TH61_05215	TH61_16535	Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.903
AMM50697.1	AMM53020.1	TH61_05215	TH61_16550	Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.927
AMM52323.1	AMM52324.1	TH61_15575	TH61_15580	Malto-oligosyltrehalose trehalohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycogen debranching protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 13 family.	0.961
AMM52323.1	AMM52471.1	TH61_15575	TH61_16540	Malto-oligosyltrehalose trehalohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.415
AMM52323.1	AMM52478.1	TH61_15575	TH61_16590	Malto-oligosyltrehalose trehalohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.453
AMM52323.1	AMM52479.1	TH61_15575	TH61_16600	Malto-oligosyltrehalose trehalohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycogen synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.453