(7 nodes) Mixed, incl. Glucuronate catabolic process, and SAF domain network (Rufibacter sp. DG31D)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AKQ45063.1	Ketohydroxyglutarate aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (219 aa)
	AKQ45064.1	Carbohydrate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (340 aa)
	uxaC	Glucuronate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (465 aa)
	AKQ45066.1	Altronate oxidoreductase; Catalyzes the formation of D-tagaturonate from D-altronate; Derived by automated computational analysis using gene prediction method: Protein Homology. (474 aa)
	AKQ45084.1	Altronate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (548 aa)
	uxuA	Mannonate dehydratase; Catalyzes the dehydration of D-mannonate. (390 aa)
	uxuA-2	Mannonate dehydratase; Catalyzes the dehydration of D-mannonate. (392 aa)

Your Current Organism:

Rufibacter sp. DG31D

NCBI taxonomy Id: 1379910
Other names: R. sp. DG31D

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKQ45063.1	AKQ45064.1	TH63_04520	TH63_04525	Ketohydroxyglutarate aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbohydrate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
AKQ45063.1	AKQ45066.1	TH63_04520	TH63_04535	Ketohydroxyglutarate aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Altronate oxidoreductase; Catalyzes the formation of D-tagaturonate from D-altronate; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.814
AKQ45063.1	AKQ45084.1	TH63_04520	TH63_04650	Ketohydroxyglutarate aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Altronate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.498
AKQ45063.1	uxaC	TH63_04520	TH63_04530	Ketohydroxyglutarate aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glucuronate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.932
AKQ45063.1	uxuA	TH63_04520	TH63_05310	Ketohydroxyglutarate aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.	0.629
AKQ45063.1	uxuA-2	TH63_04520	TH63_13700	Ketohydroxyglutarate aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.	0.599
AKQ45064.1	AKQ45063.1	TH63_04525	TH63_04520	Carbohydrate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ketohydroxyglutarate aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
AKQ45064.1	AKQ45066.1	TH63_04525	TH63_04535	Carbohydrate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Altronate oxidoreductase; Catalyzes the formation of D-tagaturonate from D-altronate; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.809
AKQ45064.1	AKQ45084.1	TH63_04525	TH63_04650	Carbohydrate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Altronate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.897
AKQ45064.1	uxaC	TH63_04525	TH63_04530	Carbohydrate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glucuronate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.945
AKQ45064.1	uxuA	TH63_04525	TH63_05310	Carbohydrate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.	0.913
AKQ45064.1	uxuA-2	TH63_04525	TH63_13700	Carbohydrate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.	0.906
AKQ45066.1	AKQ45063.1	TH63_04535	TH63_04520	Altronate oxidoreductase; Catalyzes the formation of D-tagaturonate from D-altronate; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ketohydroxyglutarate aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.814
AKQ45066.1	AKQ45064.1	TH63_04535	TH63_04525	Altronate oxidoreductase; Catalyzes the formation of D-tagaturonate from D-altronate; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbohydrate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.809
AKQ45066.1	AKQ45084.1	TH63_04535	TH63_04650	Altronate oxidoreductase; Catalyzes the formation of D-tagaturonate from D-altronate; Derived by automated computational analysis using gene prediction method: Protein Homology.	Altronate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.985
AKQ45066.1	uxaC	TH63_04535	TH63_04530	Altronate oxidoreductase; Catalyzes the formation of D-tagaturonate from D-altronate; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glucuronate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
AKQ45066.1	uxuA	TH63_04535	TH63_05310	Altronate oxidoreductase; Catalyzes the formation of D-tagaturonate from D-altronate; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.	0.700
AKQ45066.1	uxuA-2	TH63_04535	TH63_13700	Altronate oxidoreductase; Catalyzes the formation of D-tagaturonate from D-altronate; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.	0.676
AKQ45084.1	AKQ45063.1	TH63_04650	TH63_04520	Altronate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ketohydroxyglutarate aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.498
AKQ45084.1	AKQ45064.1	TH63_04650	TH63_04525	Altronate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbohydrate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.897