(113 nodes) Phosphorelay signal transduction system, and Diguanylate cyclase network (Acidobacteriaceae bacterium URHE0068)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_000620725_00029	Unannotated protein. (127 aa)
	GCA_000620725_00087	Unannotated protein. (639 aa)
	GCA_000620725_00264	Unannotated protein. (1457 aa)
	GCA_000620725_00265	Unannotated protein. (122 aa)
	GCA_000620725_00278	Unannotated protein. (355 aa)
	GCA_000620725_00279	Unannotated protein. (313 aa)
	GCA_000620725_00280	Unannotated protein. (509 aa)
	GCA_000620725_00281	Unannotated protein. (481 aa)
	GCA_000620725_00310	Unannotated protein. (1124 aa)
	GCA_000620725_00361	Unannotated protein. (812 aa)
	GCA_000620725_00416	Unannotated protein. (613 aa)
	GCA_000620725_00527	Unannotated protein. (335 aa)
	GCA_000620725_00590	Unannotated protein. (2111 aa)
	GCA_000620725_00635	Unannotated protein. (255 aa)
	GCA_000620725_00717	Unannotated protein. (642 aa)
	GCA_000620725_00777	Unannotated protein. (771 aa)
	GCA_000620725_00778	Unannotated protein. (770 aa)
	GCA_000620725_00816	Unannotated protein. (508 aa)
	GCA_000620725_00852	Unannotated protein. (132 aa)
	GCA_000620725_01127	Unannotated protein. (366 aa)
	GCA_000620725_01128	Unannotated protein. (488 aa)
	GCA_000620725_01176	Unannotated protein. (334 aa)
	GCA_000620725_01215	Unannotated protein. (808 aa)
	GCA_000620725_01241	Unannotated protein. (132 aa)
	GCA_000620725_01288	Unannotated protein. (479 aa)
	GCA_000620725_01289	Unannotated protein. (959 aa)
	GCA_000620725_01370	Unannotated protein. (1185 aa)
	GCA_000620725_01460	Unannotated protein. (614 aa)
	GCA_000620725_01617	Unannotated protein. (328 aa)
	GCA_000620725_01690	Unannotated protein. (792 aa)
	GCA_000620725_01712	Unannotated protein. (166 aa)
	GCA_000620725_01814	Unannotated protein. (124 aa)
	GCA_000620725_01856	Unannotated protein. (520 aa)
	GCA_000620725_01857	Unannotated protein. (779 aa)
	GCA_000620725_01883	Unannotated protein. (473 aa)
	GCA_000620725_01884	Unannotated protein. (232 aa)
	GCA_000620725_01962	Unannotated protein. (110 aa)
	GCA_000620725_01963	Unannotated protein. (124 aa)
	GCA_000620725_01964	Unannotated protein. (1150 aa)
	GCA_000620725_02096	Unannotated protein. (397 aa)
	GCA_000620725_02173	Unannotated protein. (139 aa)
	GCA_000620725_02301	Unannotated protein. (567 aa)
	GCA_000620725_02348	Unannotated protein. (233 aa)
	GCA_000620725_02349	Unannotated protein. (438 aa)
	GCA_000620725_02425	Unannotated protein. (83 aa)
	GCA_000620725_02616	Unannotated protein. (331 aa)
	GCA_000620725_02617	Unannotated protein. (871 aa)
	GCA_000620725_02621	Unannotated protein. (551 aa)
	GCA_000620725_02623	Unannotated protein. (303 aa)
	GCA_000620725_02675	Unannotated protein. (504 aa)
	GCA_000620725_02718	Unannotated protein. (341 aa)
	GCA_000620725_02723	Unannotated protein. (166 aa)
	GCA_000620725_02733	Unannotated protein. (51 aa)
	GCA_000620725_02759	Unannotated protein. (717 aa)
	GCA_000620725_02760	Unannotated protein. (500 aa)
	GCA_000620725_02763	Unannotated protein. (373 aa)
	GCA_000620725_02764	Unannotated protein. (708 aa)
	GCA_000620725_02791	Unannotated protein. (128 aa)
	GCA_000620725_02880	Unannotated protein. (326 aa)
	GCA_000620725_02909	Unannotated protein. (1321 aa)
	GCA_000620725_02910	Unannotated protein. (385 aa)
	GCA_000620725_02963	Unannotated protein. (213 aa)
	GCA_000620725_02966	Unannotated protein. (1091 aa)
	GCA_000620725_02993	Unannotated protein. (467 aa)
	GCA_000620725_03006	Unannotated protein. (284 aa)
	GCA_000620725_03139	Unannotated protein. (258 aa)
	GCA_000620725_03171	Unannotated protein. (92 aa)
	GCA_000620725_03210	Unannotated protein. (187 aa)
	GCA_000620725_03511	Unannotated protein. (775 aa)
	GCA_000620725_03512	Unannotated protein. (157 aa)
	GCA_000620725_03513	Unannotated protein. (366 aa)
	GCA_000620725_03514	Unannotated protein. (277 aa)
	GCA_000620725_03516	Unannotated protein. (263 aa)
	GCA_000620725_03517	Unannotated protein. (420 aa)
	GCA_000620725_03607	Unannotated protein. (549 aa)
	GCA_000620725_03608	Unannotated protein. (493 aa)
	GCA_000620725_03609	Unannotated protein. (300 aa)
	GCA_000620725_03619	Unannotated protein. (591 aa)
	GCA_000620725_03625	Unannotated protein. (477 aa)
	GCA_000620725_03626	Unannotated protein. (229 aa)
	GCA_000620725_03645	Unannotated protein. (447 aa)
	GCA_000620725_03678	Unannotated protein. (546 aa)
	GCA_000620725_03865	Unannotated protein. (468 aa)
	GCA_000620725_03911	Unannotated protein. (632 aa)
	GCA_000620725_03916	Unannotated protein. (364 aa)
	GCA_000620725_03917	Unannotated protein. (248 aa)
	GCA_000620725_03918	Unannotated protein. (443 aa)
	GCA_000620725_03938	Unannotated protein. (113 aa)
	GCA_000620725_03977	Unannotated protein. (376 aa)
	GCA_000620725_04071	Unannotated protein. (465 aa)
	GCA_000620725_04143	Unannotated protein. (127 aa)
	GCA_000620725_04145	Unannotated protein. (932 aa)
	GCA_000620725_04209	Unannotated protein. (488 aa)
	GCA_000620725_04280	Unannotated protein. (367 aa)
	GCA_000620725_04281	Unannotated protein. (137 aa)
	GCA_000620725_04282	Unannotated protein. (208 aa)
	GCA_000620725_04283	Unannotated protein. (1033 aa)
	GCA_000620725_04338	Unannotated protein. (229 aa)
	GCA_000620725_04361	Unannotated protein. (723 aa)
	GCA_000620725_04479	Unannotated protein. (736 aa)
	GCA_000620725_04523	Unannotated protein. (471 aa)
	GCA_000620725_04623	Unannotated protein. (451 aa)
	GCA_000620725_04624	Unannotated protein. (768 aa)
	GCA_000620725_04662	Unannotated protein. (464 aa)
	GCA_000620725_04822	Unannotated protein. (752 aa)
	GCA_000620725_04925	Unannotated protein. (822 aa)
	GCA_000620725_04940	Unannotated protein. (624 aa)
	GCA_000620725_04992	Unannotated protein. (344 aa)
	GCA_000620725_05263	Unannotated protein. (217 aa)
	GCA_000620725_05343	Unannotated protein. (443 aa)
	GCA_000620725_05344	Unannotated protein. (470 aa)
	GCA_000620725_05402	Unannotated protein. (668 aa)
	GCA_000620725_05406	Unannotated protein. (147 aa)

Your Current Organism:

Acidobacteriaceae bacterium URHE0068

NCBI taxonomy Id: 1380348
Other names: A. bacterium URHE0068

Send network to Cytoscape

Export your current network:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_000620725_00029	GCA_000620725_00264	Unannotated protein.	Unannotated protein.	0.978
GCA_000620725_00029	GCA_000620725_00265	Unannotated protein.	Unannotated protein.	0.968
GCA_000620725_00029	GCA_000620725_00278	Unannotated protein.	Unannotated protein.	0.565
GCA_000620725_00029	GCA_000620725_00280	Unannotated protein.	Unannotated protein.	0.546
GCA_000620725_00029	GCA_000620725_00281	Unannotated protein.	Unannotated protein.	0.475
GCA_000620725_00029	GCA_000620725_00310	Unannotated protein.	Unannotated protein.	0.820
GCA_000620725_00029	GCA_000620725_00361	Unannotated protein.	Unannotated protein.	0.768
GCA_000620725_00029	GCA_000620725_00416	Unannotated protein.	Unannotated protein.	0.816
GCA_000620725_00029	GCA_000620725_00527	Unannotated protein.	Unannotated protein.	0.439
GCA_000620725_00029	GCA_000620725_00590	Unannotated protein.	Unannotated protein.	0.982
GCA_000620725_00029	GCA_000620725_00635	Unannotated protein.	Unannotated protein.	0.740
GCA_000620725_00029	GCA_000620725_00777	Unannotated protein.	Unannotated protein.	0.693
GCA_000620725_00029	GCA_000620725_00778	Unannotated protein.	Unannotated protein.	0.430
GCA_000620725_00029	GCA_000620725_00852	Unannotated protein.	Unannotated protein.	0.481
GCA_000620725_00029	GCA_000620725_01215	Unannotated protein.	Unannotated protein.	0.920
GCA_000620725_00029	GCA_000620725_01289	Unannotated protein.	Unannotated protein.	0.847
GCA_000620725_00029	GCA_000620725_01460	Unannotated protein.	Unannotated protein.	0.875
GCA_000620725_00029	GCA_000620725_01690	Unannotated protein.	Unannotated protein.	0.765
GCA_000620725_00029	GCA_000620725_01712	Unannotated protein.	Unannotated protein.	0.952
GCA_000620725_00029	GCA_000620725_01814	Unannotated protein.	Unannotated protein.	0.494