(25 nodes) Mixed, incl. His Kinase A (phosphoacceptor) domain, and Y_Y_Y domain network (Acidobacteriaceae bacterium URHE0068)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_000620725_00264	Unannotated protein. (1457 aa)
	GCA_000620725_00265	Unannotated protein. (122 aa)
	GCA_000620725_00310	Unannotated protein. (1124 aa)
	GCA_000620725_00416	Unannotated protein. (613 aa)
	GCA_000620725_01215	Unannotated protein. (808 aa)
	GCA_000620725_01460	Unannotated protein. (614 aa)
	GCA_000620725_01690	Unannotated protein. (792 aa)
	GCA_000620725_01712	Unannotated protein. (166 aa)
	GCA_000620725_01962	Unannotated protein. (110 aa)
	GCA_000620725_01964	Unannotated protein. (1150 aa)
	GCA_000620725_02733	Unannotated protein. (51 aa)
	GCA_000620725_02759	Unannotated protein. (717 aa)
	GCA_000620725_02760	Unannotated protein. (500 aa)
	GCA_000620725_02791	Unannotated protein. (128 aa)
	GCA_000620725_02880	Unannotated protein. (326 aa)
	GCA_000620725_02909	Unannotated protein. (1321 aa)
	GCA_000620725_02910	Unannotated protein. (385 aa)
	GCA_000620725_02966	Unannotated protein. (1091 aa)
	GCA_000620725_03006	Unannotated protein. (284 aa)
	GCA_000620725_03139	Unannotated protein. (258 aa)
	GCA_000620725_03210	Unannotated protein. (187 aa)
	GCA_000620725_04145	Unannotated protein. (932 aa)
	GCA_000620725_04662	Unannotated protein. (464 aa)
	GCA_000620725_05402	Unannotated protein. (668 aa)
	GCA_000620725_05406	Unannotated protein. (147 aa)

Your Current Organism:

Acidobacteriaceae bacterium URHE0068

NCBI taxonomy Id: 1380348
Other names: A. bacterium URHE0068

Send network to Cytoscape

Export your current network:

... as a bitmap image:

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file format is 'PNG': portable network graphic

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_000620725_00264	GCA_000620725_00265	Unannotated protein.	Unannotated protein.	0.999
GCA_000620725_00264	GCA_000620725_00310	Unannotated protein.	Unannotated protein.	0.998
GCA_000620725_00264	GCA_000620725_00416	Unannotated protein.	Unannotated protein.	0.993
GCA_000620725_00264	GCA_000620725_01215	Unannotated protein.	Unannotated protein.	0.998
GCA_000620725_00264	GCA_000620725_01460	Unannotated protein.	Unannotated protein.	0.988
GCA_000620725_00264	GCA_000620725_01690	Unannotated protein.	Unannotated protein.	0.992
GCA_000620725_00264	GCA_000620725_01712	Unannotated protein.	Unannotated protein.	0.991
GCA_000620725_00264	GCA_000620725_01962	Unannotated protein.	Unannotated protein.	0.995
GCA_000620725_00264	GCA_000620725_01964	Unannotated protein.	Unannotated protein.	0.998
GCA_000620725_00264	GCA_000620725_02733	Unannotated protein.	Unannotated protein.	0.998
GCA_000620725_00264	GCA_000620725_02759	Unannotated protein.	Unannotated protein.	0.996
GCA_000620725_00264	GCA_000620725_02760	Unannotated protein.	Unannotated protein.	0.999
GCA_000620725_00264	GCA_000620725_02791	Unannotated protein.	Unannotated protein.	0.998
GCA_000620725_00264	GCA_000620725_02880	Unannotated protein.	Unannotated protein.	0.970
GCA_000620725_00264	GCA_000620725_02909	Unannotated protein.	Unannotated protein.	0.999
GCA_000620725_00264	GCA_000620725_02910	Unannotated protein.	Unannotated protein.	0.959
GCA_000620725_00264	GCA_000620725_02966	Unannotated protein.	Unannotated protein.	0.996
GCA_000620725_00264	GCA_000620725_03006	Unannotated protein.	Unannotated protein.	0.998
GCA_000620725_00264	GCA_000620725_03139	Unannotated protein.	Unannotated protein.	0.998
GCA_000620725_00264	GCA_000620725_03210	Unannotated protein.	Unannotated protein.	0.999