11 items (Pochonia chlamydosporia 170) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VFPPC_18773	Sterol delta 5,6-desaturase ERG3; Belongs to the sterol desaturase family. (345 aa)
	VFPPC_15506	Class I alpha-mannosidase. (252 aa)
	VFPPC_02350	Emopamil-binding protein. (227 aa)
	VFPPC_02457	C6 transcription factor. (243 aa)
	VFPPC_04409	Uncharacterized protein. (412 aa)
	VFPPC_04310	Emopamil binding protein domain-containing protein. (229 aa)
	VFPPC_08669	Galactose-1-phosphate uridylyltransferase. (428 aa)
	VFPPC_06308	FAD binding domain-containing protein. (521 aa)
	VFPPC_14688	Emopamil-binding protein. (237 aa)
	VFPPC_07065	C-5 sterol desaturase; Belongs to the sterol desaturase family. (348 aa)
	VFPPC_01687	24-dehydrocholesterol reductase. (517 aa)

Your Current Organism:

Pochonia chlamydosporia 170

NCBI taxonomy Id: 1380566
Other names: Metacordyceps chlamydosporia 170, P. chlamydosporia 170

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VFPPC_01687	VFPPC_02350	A0A179G9C1	A0A179FWM4	24-dehydrocholesterol reductase.	Emopamil-binding protein.	0.815
VFPPC_01687	VFPPC_02457	A0A179G9C1	A0A179FWB0	24-dehydrocholesterol reductase.	C6 transcription factor.	0.485
VFPPC_01687	VFPPC_04310	A0A179G9C1	A0A179FQU7	24-dehydrocholesterol reductase.	Emopamil binding protein domain-containing protein.	0.815
VFPPC_01687	VFPPC_04409	A0A179G9C1	A0A179FSQ8	24-dehydrocholesterol reductase.	Uncharacterized protein.	0.485
VFPPC_01687	VFPPC_07065	A0A179G9C1	A0A179FA17	24-dehydrocholesterol reductase.	C-5 sterol desaturase; Belongs to the sterol desaturase family.	0.860
VFPPC_01687	VFPPC_14688	A0A179G9C1	A0A179FD35	24-dehydrocholesterol reductase.	Emopamil-binding protein.	0.487
VFPPC_01687	VFPPC_15506	A0A179G9C1	A0A179FXY1	24-dehydrocholesterol reductase.	Class I alpha-mannosidase.	0.485
VFPPC_01687	VFPPC_18773	A0A179G9C1	A0A219ARV9	24-dehydrocholesterol reductase.	Sterol delta 5,6-desaturase ERG3; Belongs to the sterol desaturase family.	0.860
VFPPC_02350	VFPPC_01687	A0A179FWM4	A0A179G9C1	Emopamil-binding protein.	24-dehydrocholesterol reductase.	0.815
VFPPC_02350	VFPPC_06308	A0A179FWM4	A0A179FJE2	Emopamil-binding protein.	FAD binding domain-containing protein.	0.815
VFPPC_02350	VFPPC_07065	A0A179FWM4	A0A179FA17	Emopamil-binding protein.	C-5 sterol desaturase; Belongs to the sterol desaturase family.	0.885
VFPPC_02350	VFPPC_08669	A0A179FWM4	A0A179FNS5	Emopamil-binding protein.	Galactose-1-phosphate uridylyltransferase.	0.664
VFPPC_02350	VFPPC_18773	A0A179FWM4	A0A219ARV9	Emopamil-binding protein.	Sterol delta 5,6-desaturase ERG3; Belongs to the sterol desaturase family.	0.885
VFPPC_02457	VFPPC_01687	A0A179FWB0	A0A179G9C1	C6 transcription factor.	24-dehydrocholesterol reductase.	0.485
VFPPC_02457	VFPPC_06308	A0A179FWB0	A0A179FJE2	C6 transcription factor.	FAD binding domain-containing protein.	0.485
VFPPC_02457	VFPPC_07065	A0A179FWB0	A0A179FA17	C6 transcription factor.	C-5 sterol desaturase; Belongs to the sterol desaturase family.	0.578
VFPPC_02457	VFPPC_08669	A0A179FWB0	A0A179FNS5	C6 transcription factor.	Galactose-1-phosphate uridylyltransferase.	0.485
VFPPC_02457	VFPPC_18773	A0A179FWB0	A0A219ARV9	C6 transcription factor.	Sterol delta 5,6-desaturase ERG3; Belongs to the sterol desaturase family.	0.578
VFPPC_04310	VFPPC_01687	A0A179FQU7	A0A179G9C1	Emopamil binding protein domain-containing protein.	24-dehydrocholesterol reductase.	0.815
VFPPC_04310	VFPPC_06308	A0A179FQU7	A0A179FJE2	Emopamil binding protein domain-containing protein.	FAD binding domain-containing protein.	0.815