STRINGSTRING
rimO rimO DSY1968 DSY1968 DSY2448 DSY2448 DSY2850 DSY2850 DSY0083 DSY0083 DSY3126 DSY3126 DSY1522 DSY1522 miaB miaB DSY3169 DSY3169 DSY4030 DSY4030 DSY4423 DSY4423 DSY4847 DSY4847
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rimOHypothetical protein; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily. (445 aa)
DSY1968Hypothetical protein; Similarity to COG1032 Fe-S oxidoreductases family 2(Evalue: 1E-149). (642 aa)
DSY2448Hypothetical protein; Similarity to COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases(Evalue: 9E-90). (518 aa)
DSY2850Hypothetical protein; Similarity to COG1032 Fe-S oxidoreductases family 2(Evalue: 5E-65). (461 aa)
DSY0083Hypothetical protein; Similarity to COG1032 Fe-S oxidoreductases family 2(Evalue: 2E-47). (445 aa)
DSY3126Hypothetical protein; Similarity to COG0621 2-methylthioadenine synthetase(Evalue: 1E-123). (441 aa)
DSY1522Hypothetical protein; Similarity to COG1032 Fe-S oxidoreductases family 2(Evalue: 5E-67). (291 aa)
miaBHypothetical protein; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine. (447 aa)
DSY3169Hypothetical protein; Similarity to COG1032 Fe-S oxidoreductases family 2(Evalue: 1E-154). (618 aa)
DSY4030Hypothetical protein; Similarity to COG1242 Uncharacterized Fe-S oxidoreductases(Evalue: 1E-106). (334 aa)
DSY4423Hypothetical protein; Similarity to COG1032 Fe-S oxidoreductases family 2(Evalue: 9E-45). (456 aa)
DSY4847Hypothetical protein; Similarity to COG1032 Fe-S oxidoreductases family 2(Evalue: 1E-101). (581 aa)
Your Current Organism:
Desulfitobacterium hafniense
NCBI taxonomy Id: 138119
Other names: D. hafniense Y51, Desulfitobacterium hafniense Y51, Desulfitobacterium hafniense str. Y51, Desulfitobacterium hafniense strain Y51, Desulfitobacterium sp. Y51
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