(38 nodes) Mostly uncharacterized, incl. Peroxidase activity, and Cell pole network (Hymenobacter sp. DG25B)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AIZ62538.1	General stress protein CsbD; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0337 (CsbD) family. (72 aa)
	AIZ62926.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (139 aa)
	AIZ63060.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (142 aa)
	AIZ63061.1	Dihydrofolate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (189 aa)
	AIZ64993.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (249 aa)
	AIZ64994.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (117 aa)
	AIZ65015.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (138 aa)
	AIZ63312.1	Catalase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the catalase family. (557 aa)
	AIZ65047.1	General stress protein CsbD; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0337 (CsbD) family. (67 aa)
	AIZ63423.1	Clp protease ClpS; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ClpS family. (93 aa)
	AIZ63437.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (312 aa)
	AIZ63532.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (96 aa)
	AIZ63541.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (148 aa)
	AIZ63550.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (132 aa)
	AIZ63551.1	Dimethylallyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (226 aa)
	AIZ65084.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (88 aa)
	AIZ63552.1	Aldehyde reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (385 aa)
	AIZ63553.1	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (330 aa)
	AIZ63554.1	Ohr subfamily peroxiredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (144 aa)
	AIZ65085.1	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (137 aa)
	AIZ64035.1	General stress protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (170 aa)
	AIZ65190.1	Trehalose-6-phosphate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (724 aa)
	AIZ65198.1	DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Dps family. (188 aa)
	AIZ64191.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (273 aa)
	AIZ64192.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (274 aa)
	AIZ64271.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (132 aa)
	AIZ64272.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (180 aa)
	AIZ64273.1	Isochorismatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (208 aa)
	AIZ64274.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (178 aa)
	AIZ64412.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (83 aa)
	AIZ64413.1	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (335 aa)
	AIZ64414.1	Thiol-disulfide oxidoreductase DCC; Derived by automated computational analysis using gene prediction method: Protein Homology. (137 aa)
	AIZ64566.1	Epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (312 aa)
	AIZ64573.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (103 aa)
	AIZ64639.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (192 aa)
	AIZ64691.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (166 aa)
	AIZ65302.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (180 aa)
	AIZ64815.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (95 aa)

Your Current Organism:

Hymenobacter sp. DG25B

NCBI taxonomy Id: 1385664
Other names: H. sp. DG25B

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIZ62538.1	AIZ63437.1	PK28_00420	PK28_06585	General stress protein CsbD; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0337 (CsbD) family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.445
AIZ62538.1	AIZ63532.1	PK28_00420	PK28_07195	General stress protein CsbD; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0337 (CsbD) family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.445
AIZ62538.1	AIZ64035.1	PK28_00420	PK28_10615	General stress protein CsbD; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0337 (CsbD) family.	General stress protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.710
AIZ62538.1	AIZ64192.1	PK28_00420	PK28_11765	General stress protein CsbD; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0337 (CsbD) family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.458
AIZ62538.1	AIZ64566.1	PK28_00420	PK28_14390	General stress protein CsbD; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0337 (CsbD) family.	Epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.424
AIZ62538.1	AIZ64573.1	PK28_00420	PK28_14440	General stress protein CsbD; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0337 (CsbD) family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.573
AIZ62538.1	AIZ65015.1	PK28_00420	PK28_04795	General stress protein CsbD; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0337 (CsbD) family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.494
AIZ63060.1	AIZ63061.1	PK28_03965	PK28_03970	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dihydrofolate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.497
AIZ63061.1	AIZ63060.1	PK28_03970	PK28_03965	Dihydrofolate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.497
AIZ63312.1	AIZ63551.1	PK28_05670	PK28_07340	Catalase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the catalase family.	Dimethylallyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.482
AIZ63312.1	AIZ65190.1	PK28_05670	PK28_11435	Catalase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the catalase family.	Trehalose-6-phosphate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.956
AIZ63312.1	AIZ65198.1	PK28_05670	PK28_11695	Catalase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the catalase family.	DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Dps family.	0.438
AIZ63423.1	AIZ65198.1	PK28_06460	PK28_11695	Clp protease ClpS; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ClpS family.	DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Dps family.	0.776
AIZ63437.1	AIZ62538.1	PK28_06585	PK28_00420	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	General stress protein CsbD; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0337 (CsbD) family.	0.445
AIZ63437.1	AIZ63552.1	PK28_06585	PK28_07350	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aldehyde reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.441
AIZ63437.1	AIZ64035.1	PK28_06585	PK28_10615	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	General stress protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.509
AIZ63437.1	AIZ64566.1	PK28_06585	PK28_14390	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.502
AIZ63437.1	AIZ64691.1	PK28_06585	PK28_15265	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.789
AIZ63437.1	AIZ65047.1	PK28_06585	PK28_06020	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	General stress protein CsbD; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0337 (CsbD) family.	0.445
AIZ63532.1	AIZ62538.1	PK28_07195	PK28_00420	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	General stress protein CsbD; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0337 (CsbD) family.	0.445