(13 nodes) rRNA (uridine-N3-)-methyltransferase activity, and Zinc finger C2H2 superfamily network (Aspergillus ruber)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A017RZD8	Uncharacterized protein. (296 aa)
	A0A017S1T4	Uncharacterized protein. (713 aa)
	A0A017S2K9	CCHC-type domain-containing protein. (625 aa)
	A0A017S5C4	Putative C6 and C2H2 transcription factor. (396 aa)
	A0A017S6T5	Uncharacterized protein. (394 aa)
	A0A017SCK2	Putative C2H2 transcription factor. (739 aa)
	A0A017SGA3	Uncharacterized protein. (145 aa)
	A0A017SJS4	Putative C2H2 finger domain protein. (676 aa)
	A0A017SJT7	Uncharacterized protein. (150 aa)
	A0A017SMC7	BTB domain-containing protein. (170 aa)
	A0A017SMK5	Uncharacterized protein. (165 aa)
	A0A017SSB3	Putative C2H2 finger domain protein. (440 aa)
	A0A017SSS3	Uncharacterized protein. (122 aa)

Your Current Organism:

Aspergillus ruber

NCBI taxonomy Id: 1388766
Other names: A. ruber CBS 135680, Aspergillus ruber CBS 135680, Aspergillus rubrum CBS 135680, Eurotium rubrum CBS 135680

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A017RZD8	A0A017S6T5	Uncharacterized protein.	Uncharacterized protein.	0.525
A0A017RZD8	A0A017SGA3	Uncharacterized protein.	Uncharacterized protein.	0.525
A0A017RZD8	A0A017SMC7	Uncharacterized protein.	BTB domain-containing protein.	0.525
A0A017S1T4	A0A017S6T5	Uncharacterized protein.	Uncharacterized protein.	0.525
A0A017S1T4	A0A017SGA3	Uncharacterized protein.	Uncharacterized protein.	0.525
A0A017S1T4	A0A017SMC7	Uncharacterized protein.	BTB domain-containing protein.	0.525
A0A017S5C4	A0A017S6T5	Putative C6 and C2H2 transcription factor.	Uncharacterized protein.	0.525
A0A017S5C4	A0A017SGA3	Putative C6 and C2H2 transcription factor.	Uncharacterized protein.	0.525
A0A017S5C4	A0A017SMC7	Putative C6 and C2H2 transcription factor.	BTB domain-containing protein.	0.525
A0A017S6T5	A0A017RZD8	Uncharacterized protein.	Uncharacterized protein.	0.525
A0A017S6T5	A0A017S1T4	Uncharacterized protein.	Uncharacterized protein.	0.525
A0A017S6T5	A0A017S5C4	Uncharacterized protein.	Putative C6 and C2H2 transcription factor.	0.525
A0A017S6T5	A0A017SCK2	Uncharacterized protein.	Putative C2H2 transcription factor.	0.525
A0A017S6T5	A0A017SJS4	Uncharacterized protein.	Putative C2H2 finger domain protein.	0.525
A0A017S6T5	A0A017SSB3	Uncharacterized protein.	Putative C2H2 finger domain protein.	0.525
A0A017S6T5	A0A017SSS3	Uncharacterized protein.	Uncharacterized protein.	0.525
A0A017SCK2	A0A017S6T5	Putative C2H2 transcription factor.	Uncharacterized protein.	0.525
A0A017SCK2	A0A017SGA3	Putative C2H2 transcription factor.	Uncharacterized protein.	0.525
A0A017SCK2	A0A017SMC7	Putative C2H2 transcription factor.	BTB domain-containing protein.	0.525
A0A017SGA3	A0A017RZD8	Uncharacterized protein.	Uncharacterized protein.	0.525