(5 nodes) U6 snRNP network (Aspergillus ruber)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A017S4D7	Uncharacterized protein. (382 aa)
	A0A017S8X4	Sm domain-containing protein. (75 aa)
	A0A017SGG9	PAT1 domain-containing protein. (820 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (118 aa)
	A0A017SRA8	U6 snRNA-associated Sm-like protein LSm7. (135 aa)

Your Current Organism:

Aspergillus ruber

NCBI taxonomy Id: 1388766
Other names: A. ruber CBS 135680, Aspergillus ruber CBS 135680, Aspergillus rubrum CBS 135680, Eurotium rubrum CBS 135680

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A017S4D7	A0A017S8X4	A0A017S4D7	A0A017S8X4	Uncharacterized protein.	Sm domain-containing protein.	0.999
A0A017S4D7	A0A017SGG9	A0A017S4D7	A0A017SGG9	Uncharacterized protein.	PAT1 domain-containing protein.	0.999
A0A017S4D7	A0A017SRA8	A0A017S4D7	A0A017SRA8	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm7.	0.999
A0A017S4D7	LSM4	A0A017S4D7	A0A017SM17	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
A0A017S8X4	A0A017S4D7	A0A017S8X4	A0A017S4D7	Sm domain-containing protein.	Uncharacterized protein.	0.999
A0A017S8X4	A0A017SGG9	A0A017S8X4	A0A017SGG9	Sm domain-containing protein.	PAT1 domain-containing protein.	0.999
A0A017S8X4	A0A017SRA8	A0A017S8X4	A0A017SRA8	Sm domain-containing protein.	U6 snRNA-associated Sm-like protein LSm7.	0.999
A0A017S8X4	LSM4	A0A017S8X4	A0A017SM17	Sm domain-containing protein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
A0A017SGG9	A0A017S4D7	A0A017SGG9	A0A017S4D7	PAT1 domain-containing protein.	Uncharacterized protein.	0.999
A0A017SGG9	A0A017S8X4	A0A017SGG9	A0A017S8X4	PAT1 domain-containing protein.	Sm domain-containing protein.	0.999
A0A017SGG9	A0A017SRA8	A0A017SGG9	A0A017SRA8	PAT1 domain-containing protein.	U6 snRNA-associated Sm-like protein LSm7.	0.999
A0A017SGG9	LSM4	A0A017SGG9	A0A017SM17	PAT1 domain-containing protein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
A0A017SRA8	A0A017S4D7	A0A017SRA8	A0A017S4D7	U6 snRNA-associated Sm-like protein LSm7.	Uncharacterized protein.	0.999
A0A017SRA8	A0A017S8X4	A0A017SRA8	A0A017S8X4	U6 snRNA-associated Sm-like protein LSm7.	Sm domain-containing protein.	0.999
A0A017SRA8	A0A017SGG9	A0A017SRA8	A0A017SGG9	U6 snRNA-associated Sm-like protein LSm7.	PAT1 domain-containing protein.	0.999
A0A017SRA8	LSM4	A0A017SRA8	A0A017SM17	U6 snRNA-associated Sm-like protein LSm7.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
LSM4	A0A017S4D7	A0A017SM17	A0A017S4D7	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.999
LSM4	A0A017S8X4	A0A017SM17	A0A017S8X4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Sm domain-containing protein.	0.999
LSM4	A0A017SGG9	A0A017SM17	A0A017SGG9	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	PAT1 domain-containing protein.	0.999
LSM4	A0A017SRA8	A0A017SM17	A0A017SRA8	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm7.	0.999