(45 nodes) F-box domain network (Aspergillus ruber)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A017S9R3	F-box domain-containing protein. (482 aa)
	A0A017SA25	F-box domain-containing protein. (345 aa)
	A0A017SAN6	F-box domain protein. (345 aa)
	A0A017SBW8	F-box domain protein. (718 aa)
	A0A017SC00	F-box domain-containing protein. (602 aa)
	A0A017SCA8	F-box domain-containing protein. (143 aa)
	A0A017SCB8	F-box domain-containing protein. (385 aa)
	A0A017SE82	F-box domain protein. (582 aa)
	A0A017SEP0	WD40 repeat-like protein. (683 aa)
	A0A017SG11	F-box domain-containing protein. (551 aa)
	A0A017SGI9	F-box domain-containing protein. (388 aa)
	A0A017SHY6	F-box domain-containing protein. (636 aa)
	A0A017SIR3	F-box domain-containing protein. (75 aa)
	A0A017SJ35	YccV-like-domain-containing protein. (580 aa)
	A0A017SKR9	F-box domain-containing protein. (630 aa)
	A0A017SL50	F-box domain-containing protein. (294 aa)
	A0A017SL61	Putative F-box protein. (553 aa)
	A0A017SLA1	F-box domain protein. (607 aa)
	A0A017SLM6	WD40 repeat-like protein. (674 aa)
	A0A017SM26	F-box domain-containing protein. (278 aa)
	A0A017SMS1	F-box domain protein. (728 aa)
	A0A017SNE4	F-box domain protein. (398 aa)
	A0A017SP25	F-box domain-containing protein. (977 aa)
	A0A017SP82	Cyclic nucleotide-binding domain protein. (933 aa)
	A0A017SQS2	F-box domain-containing protein. (458 aa)
	A0A017SRA7	F-box domain-containing protein. (658 aa)
	A0A017SRL1	Putative F-box and JmjC domain protein. (496 aa)
	A0A017SRM0	Uncharacterized protein. (189 aa)
	A0A017SSB2	F-box domain-containing protein. (452 aa)
	A0A017SS09	Uncharacterized protein. (556 aa)
	A0A017RZ81	F-box domain-containing protein. (412 aa)
	A0A017RZW7	F-box domain protein. (421 aa)
	A0A017RZX0	F-box domain-containing protein. (443 aa)
	A0A017S161	F-box domain-containing protein. (397 aa)
	A0A017S1R0	F-box and WD domain protein. (1100 aa)
	A0A017S251	Sulfur metabolite repression control protein. (681 aa)
	A0A017S3C9	F-box domain-containing protein. (426 aa)
	A0A017S3I9	F-box domain protein. (510 aa)
	A0A017S3W2	F-box domain-containing protein. (665 aa)
	A0A017S4C7	Putative cell division control protein Cdc4. (1039 aa)
	A0A017S583	WD40 repeat-like protein. (834 aa)
	A0A017S7J3	F-box domain-containing protein. (193 aa)
	A0A017S8Y0	F-box domain-containing protein. (477 aa)
	A0A017S9D0	F-box domain-containing protein. (915 aa)
	A0A017S9J0	Secretion pathway protein Sls2/Rcy1. (889 aa)

Your Current Organism:

Aspergillus ruber

NCBI taxonomy Id: 1388766
Other names: A. ruber CBS 135680, Aspergillus ruber CBS 135680, Aspergillus rubrum CBS 135680, Eurotium rubrum CBS 135680

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A017S161	A0A017SE82	F-box domain-containing protein.	F-box domain protein.	0.455
A0A017S161	A0A017SHY6	F-box domain-containing protein.	F-box domain-containing protein.	0.406
A0A017S1R0	A0A017S251	F-box and WD domain protein.	Sulfur metabolite repression control protein.	0.406
A0A017S1R0	A0A017S583	F-box and WD domain protein.	WD40 repeat-like protein.	0.590
A0A017S1R0	A0A017SE82	F-box and WD domain protein.	F-box domain protein.	0.430
A0A017S1R0	A0A017SEP0	F-box and WD domain protein.	WD40 repeat-like protein.	0.590
A0A017S251	A0A017S1R0	Sulfur metabolite repression control protein.	F-box and WD domain protein.	0.406
A0A017S251	A0A017S4C7	Sulfur metabolite repression control protein.	Putative cell division control protein Cdc4.	0.782
A0A017S251	A0A017S583	Sulfur metabolite repression control protein.	WD40 repeat-like protein.	0.776
A0A017S251	A0A017SEP0	Sulfur metabolite repression control protein.	WD40 repeat-like protein.	0.792
A0A017S251	A0A017SLM6	Sulfur metabolite repression control protein.	WD40 repeat-like protein.	0.777
A0A017S251	A0A017SP82	Sulfur metabolite repression control protein.	Cyclic nucleotide-binding domain protein.	0.820
A0A017S4C7	A0A017S251	Putative cell division control protein Cdc4.	Sulfur metabolite repression control protein.	0.782
A0A017S4C7	A0A017S583	Putative cell division control protein Cdc4.	WD40 repeat-like protein.	0.801
A0A017S4C7	A0A017SEP0	Putative cell division control protein Cdc4.	WD40 repeat-like protein.	0.810
A0A017S4C7	A0A017SLM6	Putative cell division control protein Cdc4.	WD40 repeat-like protein.	0.890
A0A017S4C7	A0A017SP82	Putative cell division control protein Cdc4.	Cyclic nucleotide-binding domain protein.	0.814
A0A017S583	A0A017S1R0	WD40 repeat-like protein.	F-box and WD domain protein.	0.590
A0A017S583	A0A017S251	WD40 repeat-like protein.	Sulfur metabolite repression control protein.	0.776
A0A017S583	A0A017S4C7	WD40 repeat-like protein.	Putative cell division control protein Cdc4.	0.801