23 items (Sporothrix schenckii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	U7Q838_SPOS1	Uncharacterized protein. (416 aa)
	U7PME3_SPOS1	Uncharacterized protein. (225 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (159 aa)
	U7PPI6_SPOS1	Uncharacterized protein. (827 aa)
	U7PQK3_SPOS1	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (127 aa)
	U7PR18_SPOS1	Uncharacterized protein. (242 aa)
	U7PRP6_SPOS1	Uncharacterized protein. (339 aa)
	U7PRY4_SPOS1	Uncharacterized protein. (942 aa)
	U7PTA1_SPOS1	Nop domain-containing protein. (523 aa)
	U7Q893_SPOS1	Uncharacterized protein. (770 aa)
	U7PUB8_SPOS1	Uncharacterized protein. (356 aa)
	U7PUF5_SPOS1	Nop domain-containing protein. (594 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (92 aa)
	U7PX24_SPOS1	Uncharacterized protein. (262 aa)
	U7Q1J6_SPOS1	Ribosomal_L7Ae domain-containing protein. (291 aa)
	U7Q1L3_SPOS1	Ribonuclease P protein subunit. (304 aa)
	U7Q1V8_SPOS1	Uncharacterized protein. (355 aa)
	U7Q2X1_SPOS1	Uncharacterized protein. (284 aa)
	U7Q367_SPOS1	Uncharacterized protein. (408 aa)
	LSM5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (80 aa)
	U7Q4H6_SPOS1	WD_REPEATS_REGION domain-containing protein. (673 aa)
	U7Q6F1_SPOS1	rRNA 2'-O-methyltransferase fibrillarin. (329 aa)
	U7Q7F5_SPOS1	HAD_SAK_1 domain-containing protein. (622 aa)

Your Current Organism:

Sporothrix schenckii

NCBI taxonomy Id: 1391915
Other names: S. schenckii ATCC 58251, Sporothrix schenckii ATCC 58251

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSM3	LSM4	U7PVM5	U7PP05	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
LSM3	LSM5	U7PVM5	U7Q4F3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.999
LSM3	U7PQK3_SPOS1	U7PVM5	U7PQK3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.957
LSM3	U7Q1J6_SPOS1	U7PVM5	U7Q1J6	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Ribosomal_L7Ae domain-containing protein.	0.710
LSM4	LSM3	U7PP05	U7PVM5	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
LSM4	LSM5	U7PP05	U7Q4F3	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.999
LSM4	U7PQK3_SPOS1	U7PP05	U7PQK3	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.949
LSM4	U7Q1J6_SPOS1	U7PP05	U7Q1J6	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Ribosomal_L7Ae domain-containing protein.	0.698
LSM5	LSM3	U7Q4F3	U7PVM5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
LSM5	LSM4	U7Q4F3	U7PP05	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
LSM5	U7PQK3_SPOS1	U7Q4F3	U7PQK3	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.960
LSM5	U7Q1J6_SPOS1	U7Q4F3	U7Q1J6	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	Ribosomal_L7Ae domain-containing protein.	0.702
U7PME3_SPOS1	U7PQK3_SPOS1	U7PME3	U7PQK3	Uncharacterized protein.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.968
U7PME3_SPOS1	U7PR18_SPOS1	U7PME3	U7PR18	Uncharacterized protein.	Uncharacterized protein.	0.998
U7PME3_SPOS1	U7PRP6_SPOS1	U7PME3	U7PRP6	Uncharacterized protein.	Uncharacterized protein.	0.996
U7PME3_SPOS1	U7PRY4_SPOS1	U7PME3	U7PRY4	Uncharacterized protein.	Uncharacterized protein.	0.998
U7PME3_SPOS1	U7PUB8_SPOS1	U7PME3	U7PUB8	Uncharacterized protein.	Uncharacterized protein.	0.998
U7PME3_SPOS1	U7PX24_SPOS1	U7PME3	U7PX24	Uncharacterized protein.	Uncharacterized protein.	0.987
U7PME3_SPOS1	U7Q1J6_SPOS1	U7PME3	U7Q1J6	Uncharacterized protein.	Ribosomal_L7Ae domain-containing protein.	0.890
U7PME3_SPOS1	U7Q1L3_SPOS1	U7PME3	U7Q1L3	Uncharacterized protein.	Ribonuclease P protein subunit.	0.998