STRINGSTRING
LSM5 LSM5 LSM1 LSM1 U7PK83_SPOS1 U7PK83_SPOS1 U7PKC8_SPOS1 U7PKC8_SPOS1 U7PLK2_SPOS1 U7PLK2_SPOS1 LSM8 LSM8 U7PNE7_SPOS1 U7PNE7_SPOS1 LSM4 LSM4 U7PPT4_SPOS1 U7PPT4_SPOS1 U7PRT4_SPOS1 U7PRT4_SPOS1 U7PTS3_SPOS1 U7PTS3_SPOS1 LSM3 LSM3 U7PX18_SPOS1 U7PX18_SPOS1 U7PY86_SPOS1 U7PY86_SPOS1 U7PZ21_SPOS1 U7PZ21_SPOS1 U7Q3I6_SPOS1 U7Q3I6_SPOS1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (80 aa)
LSM1U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (181 aa)
U7PK83_SPOS1Small nuclear ribonucleoprotein Sm D3. (115 aa)
U7PKC8_SPOS1U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
U7PLK2_SPOS1Small nuclear ribonucleoprotein Sm D2. (116 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (100 aa)
U7PNE7_SPOS1Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (136 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (159 aa)
U7PPT4_SPOS1Small nuclear ribonucleoprotein G. (86 aa)
U7PRT4_SPOS1Sm domain-containing protein. (216 aa)
U7PTS3_SPOS1Sm domain-containing protein. (214 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (92 aa)
U7PX18_SPOS1Sm domain-containing protein. (85 aa)
U7PY86_SPOS1Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (96 aa)
U7PZ21_SPOS1Sm domain-containing protein. (141 aa)
U7Q3I6_SPOS1U6 snRNA-associated Sm-like protein LSm6. (84 aa)
Your Current Organism:
Sporothrix schenckii
NCBI taxonomy Id: 1391915
Other names: S. schenckii ATCC 58251, Sporothrix schenckii ATCC 58251
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