(5 nodes) Zinc-binding ribosomal protein, and Organellar large ribosomal subunit network (Aspergillus steynii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2I2FTT4	Ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family. (191 aa)
	A0A2I2FTX3	Uncharacterized protein. (110 aa)
	A0A2I2FZA3	Putative mitochondrial ribosomal protein. (225 aa)
	A0A2I2GQ38	Uncharacterized protein. (212 aa)
	A0A2I2GQY7	Uncharacterized protein. (60 aa)

Your Current Organism:

Aspergillus steynii

NCBI taxonomy Id: 1392250
Other names: A. steynii IBT 23096, Aspergillus steynii IBT 23096

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A2I2FTT4	A0A2I2FTX3	Ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.	Uncharacterized protein.	0.998
A0A2I2FTT4	A0A2I2FZA3	Ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.	Putative mitochondrial ribosomal protein.	0.998
A0A2I2FTT4	A0A2I2GQ38	Ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.	Uncharacterized protein.	0.998
A0A2I2FTT4	A0A2I2GQY7	Ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.	Uncharacterized protein.	0.998
A0A2I2FTX3	A0A2I2FTT4	Uncharacterized protein.	Ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.	0.998
A0A2I2FTX3	A0A2I2FZA3	Uncharacterized protein.	Putative mitochondrial ribosomal protein.	0.998
A0A2I2FTX3	A0A2I2GQ38	Uncharacterized protein.	Uncharacterized protein.	0.998
A0A2I2FTX3	A0A2I2GQY7	Uncharacterized protein.	Uncharacterized protein.	0.998
A0A2I2FZA3	A0A2I2FTT4	Putative mitochondrial ribosomal protein.	Ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.	0.998
A0A2I2FZA3	A0A2I2FTX3	Putative mitochondrial ribosomal protein.	Uncharacterized protein.	0.998
A0A2I2FZA3	A0A2I2GQ38	Putative mitochondrial ribosomal protein.	Uncharacterized protein.	0.998
A0A2I2FZA3	A0A2I2GQY7	Putative mitochondrial ribosomal protein.	Uncharacterized protein.	0.998
A0A2I2GQ38	A0A2I2FTT4	Uncharacterized protein.	Ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.	0.998
A0A2I2GQ38	A0A2I2FTX3	Uncharacterized protein.	Uncharacterized protein.	0.998
A0A2I2GQ38	A0A2I2FZA3	Uncharacterized protein.	Putative mitochondrial ribosomal protein.	0.998
A0A2I2GQ38	A0A2I2GQY7	Uncharacterized protein.	Uncharacterized protein.	0.998
A0A2I2GQY7	A0A2I2FTT4	Uncharacterized protein.	Ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.	0.998
A0A2I2GQY7	A0A2I2FTX3	Uncharacterized protein.	Uncharacterized protein.	0.998
A0A2I2GQY7	A0A2I2FZA3	Uncharacterized protein.	Putative mitochondrial ribosomal protein.	0.998
A0A2I2GQY7	A0A2I2GQ38	Uncharacterized protein.	Uncharacterized protein.	0.998