(14 nodes) COP9 signalosome, and Cul4-RING E3 ubiquitin ligase complex network (Aspergillus novofumigatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2I1BZZ1	Putative COP9 signalosome subunit 8. (216 aa)
	A0A2I1C040	Putative COP9 signalosome subunit 1. (513 aa)
	A0A2I1C0B3	Putative COP9 signalosome subunit CsnD. (419 aa)
	A0A2I1C239	Putative COP9 signalosome subunit 2. (588 aa)
	A0A2I1C4H3	PCI domain-containing protein. (159 aa)
	A0A2I1C4I4	Uncharacterized protein. (143 aa)
	A0A2I1C794	Uncharacterized protein. (925 aa)
	A0A2I1CBV9	DNA damage-binding protein CMR1; DNA-binding protein that binds to both single- and double- stranded DNA. Binds preferentially to UV-damaged DNA. May be involved in DNA-metabolic processes. (527 aa)
	A0A2I1CC94	Putative UV-damaged DNA binding protein. (1140 aa)
	A0A2I1CH93	Putative COP9 signalosome subunit 6. (399 aa)
	A0A2I1CIV1	Putative ubiquitin ligase subunit CulD; Belongs to the cullin family. (896 aa)
	A0A2I1CLR7	Uncharacterized protein. (497 aa)
	A0A2I1CP95	WD domain protein. (718 aa)
	A0A2I1CPB2	COP9 signalosome complex subunit 5. (334 aa)

Your Current Organism:

Aspergillus novofumigatus

NCBI taxonomy Id: 1392255
Other names: A. novofumigatus IBT 16806, Aspergillus novofumigatus IBT 16806

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A2I1BZZ1	A0A2I1C040	Putative COP9 signalosome subunit 8.	Putative COP9 signalosome subunit 1.	0.998
A0A2I1BZZ1	A0A2I1C0B3	Putative COP9 signalosome subunit 8.	Putative COP9 signalosome subunit CsnD.	0.997
A0A2I1BZZ1	A0A2I1C239	Putative COP9 signalosome subunit 8.	Putative COP9 signalosome subunit 2.	0.997
A0A2I1BZZ1	A0A2I1C4H3	Putative COP9 signalosome subunit 8.	PCI domain-containing protein.	0.980
A0A2I1BZZ1	A0A2I1C4I4	Putative COP9 signalosome subunit 8.	Uncharacterized protein.	0.980
A0A2I1BZZ1	A0A2I1C794	Putative COP9 signalosome subunit 8.	Uncharacterized protein.	0.983
A0A2I1BZZ1	A0A2I1CBV9	Putative COP9 signalosome subunit 8.	DNA damage-binding protein CMR1; DNA-binding protein that binds to both single- and double- stranded DNA. Binds preferentially to UV-damaged DNA. May be involved in DNA-metabolic processes.	0.874
A0A2I1BZZ1	A0A2I1CC94	Putative COP9 signalosome subunit 8.	Putative UV-damaged DNA binding protein.	0.890
A0A2I1BZZ1	A0A2I1CH93	Putative COP9 signalosome subunit 8.	Putative COP9 signalosome subunit 6.	0.995
A0A2I1BZZ1	A0A2I1CIV1	Putative COP9 signalosome subunit 8.	Putative ubiquitin ligase subunit CulD; Belongs to the cullin family.	0.946
A0A2I1BZZ1	A0A2I1CLR7	Putative COP9 signalosome subunit 8.	Uncharacterized protein.	0.997
A0A2I1BZZ1	A0A2I1CP95	Putative COP9 signalosome subunit 8.	WD domain protein.	0.692
A0A2I1BZZ1	A0A2I1CPB2	Putative COP9 signalosome subunit 8.	COP9 signalosome complex subunit 5.	0.995
A0A2I1C040	A0A2I1BZZ1	Putative COP9 signalosome subunit 1.	Putative COP9 signalosome subunit 8.	0.998
A0A2I1C040	A0A2I1C0B3	Putative COP9 signalosome subunit 1.	Putative COP9 signalosome subunit CsnD.	0.999
A0A2I1C040	A0A2I1C239	Putative COP9 signalosome subunit 1.	Putative COP9 signalosome subunit 2.	0.999
A0A2I1C040	A0A2I1C4H3	Putative COP9 signalosome subunit 1.	PCI domain-containing protein.	0.981
A0A2I1C040	A0A2I1C4I4	Putative COP9 signalosome subunit 1.	Uncharacterized protein.	0.981
A0A2I1C040	A0A2I1C794	Putative COP9 signalosome subunit 1.	Uncharacterized protein.	0.982
A0A2I1C040	A0A2I1CBV9	Putative COP9 signalosome subunit 1.	DNA damage-binding protein CMR1; DNA-binding protein that binds to both single- and double- stranded DNA. Binds preferentially to UV-damaged DNA. May be involved in DNA-metabolic processes.	0.838