8 items (Aspergillus novofumigatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2I1CEQ7	Nucleic acid-binding protein. (109 aa)
	A0A2I1CIC7	Putative topoisomerase II associated protein. (810 aa)
	A0A2I1CM56	Putative eukaryotic translation initiation factor 5. (421 aa)
	A0A2I1CP83	Putative cofactor for methionyl and glutamyl-tRNA synthetase. (425 aa)
	A0A2I1CPB0	Translation initiation factor 4B. (440 aa)
	A0A2I1C915	Putative RNA binding protein Ligatin/Tma64. (653 aa)
	A0A2I1C609	Putative translation initiation factor EF-2 gamma subunit. (499 aa)
	A0A2I1C2M9	Translational initiation factor 2 beta. (285 aa)

Your Current Organism:

Aspergillus novofumigatus

NCBI taxonomy Id: 1392255
Other names: A. novofumigatus IBT 16806, Aspergillus novofumigatus IBT 16806

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A2I1C2M9	A0A2I1C609	Translational initiation factor 2 beta.	Putative translation initiation factor EF-2 gamma subunit.	0.999
A0A2I1C2M9	A0A2I1CEQ7	Translational initiation factor 2 beta.	Nucleic acid-binding protein.	0.997
A0A2I1C2M9	A0A2I1CM56	Translational initiation factor 2 beta.	Putative eukaryotic translation initiation factor 5.	0.996
A0A2I1C2M9	A0A2I1CP83	Translational initiation factor 2 beta.	Putative cofactor for methionyl and glutamyl-tRNA synthetase.	0.507
A0A2I1C2M9	A0A2I1CPB0	Translational initiation factor 2 beta.	Translation initiation factor 4B.	0.800
A0A2I1C609	A0A2I1C2M9	Putative translation initiation factor EF-2 gamma subunit.	Translational initiation factor 2 beta.	0.999
A0A2I1C609	A0A2I1CEQ7	Putative translation initiation factor EF-2 gamma subunit.	Nucleic acid-binding protein.	0.994
A0A2I1C609	A0A2I1CM56	Putative translation initiation factor EF-2 gamma subunit.	Putative eukaryotic translation initiation factor 5.	0.997
A0A2I1C609	A0A2I1CP83	Putative translation initiation factor EF-2 gamma subunit.	Putative cofactor for methionyl and glutamyl-tRNA synthetase.	0.641
A0A2I1C609	A0A2I1CPB0	Putative translation initiation factor EF-2 gamma subunit.	Translation initiation factor 4B.	0.942
A0A2I1C915	A0A2I1CM56	Putative RNA binding protein Ligatin/Tma64.	Putative eukaryotic translation initiation factor 5.	0.422
A0A2I1CEQ7	A0A2I1C2M9	Nucleic acid-binding protein.	Translational initiation factor 2 beta.	0.997
A0A2I1CEQ7	A0A2I1C609	Nucleic acid-binding protein.	Putative translation initiation factor EF-2 gamma subunit.	0.994
A0A2I1CEQ7	A0A2I1CM56	Nucleic acid-binding protein.	Putative eukaryotic translation initiation factor 5.	0.991
A0A2I1CEQ7	A0A2I1CP83	Nucleic acid-binding protein.	Putative cofactor for methionyl and glutamyl-tRNA synthetase.	0.454
A0A2I1CEQ7	A0A2I1CPB0	Nucleic acid-binding protein.	Translation initiation factor 4B.	0.492
A0A2I1CIC7	A0A2I1CPB0	Putative topoisomerase II associated protein.	Translation initiation factor 4B.	0.463
A0A2I1CM56	A0A2I1C2M9	Putative eukaryotic translation initiation factor 5.	Translational initiation factor 2 beta.	0.996
A0A2I1CM56	A0A2I1C609	Putative eukaryotic translation initiation factor 5.	Putative translation initiation factor EF-2 gamma subunit.	0.997
A0A2I1CM56	A0A2I1C915	Putative eukaryotic translation initiation factor 5.	Putative RNA binding protein Ligatin/Tma64.	0.422