26 items (Aspergillus novofumigatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

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Your Input:
	A0A2I1CCY0	Putative U1 snRNP splicing complex subunit. (278 aa)
	A0A2I1C9N3	Putative formin binding protein. (790 aa)
	A0A2I1C4Q2	Putative splicing factor 3a subunit 2. (225 aa)
	A0A2I1C4B7	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (203 aa)
	A0A2I1C3B4	Uncharacterized protein. (522 aa)
	A0A2I1C1X9	Putative pre-mRNA splicing factor. (515 aa)
	A0A2I1C047	Small nuclear ribonucleoprotein G. (78 aa)
	A0A2I1BZA1	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (566 aa)
	A0A2I1BZ33	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (95 aa)
	A0A2I1BSL3	GH16 domain-containing protein. (337 aa)
	A0A2I1C5Y6	Sm-like ribonucleo protein. (218 aa)
	A0A2I1C8F2	U6 snRNA-associated Sm-like protein LSm7. (138 aa)
	A0A2I1CNK5	Putative splicing factor 3B subunit 1. (1229 aa)
	A0A2I1CMD9	Uncharacterized protein. (695 aa)
	A0A2I1CLD5	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (151 aa)
	A0A2I1CJB5	WD domain protein. (1587 aa)
	A0A2I1CJ37	RNA-binding domain-containing protein. (383 aa)
	A0A2I1CIY3	Small nuclear ribonucleoprotein Sm D2. (97 aa)
	A0A2I1CGI6	Splicing factor 3b, subunit 2, 145kD. (554 aa)
	A0A2I1CFY2	Putative splicing factor 3a subunit 3. (496 aa)
	A0A2I1CFV7	Putative endo-1,3(4)-beta-glucanase. (391 aa)
	A0A2I1CDT3	RNA-binding domain-containing protein. (352 aa)
	A0A2I1CDP0	RNA binding domain protein. (194 aa)
	A0A2I1CCX7	FF domain protein. (574 aa)
	A0A2I1C9U1	Putative cell cycle control protein. (674 aa)
	A0A2I1C9S8	Pre-mRNA-processing ATP-dependent RNA helicase prp5. (1193 aa)

Your Current Organism:

Aspergillus novofumigatus

NCBI taxonomy Id: 1392255
Other names: A. novofumigatus IBT 16806, Aspergillus novofumigatus IBT 16806

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A2I1BSL3	A0A2I1BZ33	GH16 domain-containing protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.913
A0A2I1BSL3	A0A2I1C047	GH16 domain-containing protein.	Small nuclear ribonucleoprotein G.	0.901
A0A2I1BSL3	A0A2I1C1X9	GH16 domain-containing protein.	Putative pre-mRNA splicing factor.	0.575
A0A2I1BSL3	A0A2I1C3B4	GH16 domain-containing protein.	Uncharacterized protein.	0.924
A0A2I1BSL3	A0A2I1C4B7	GH16 domain-containing protein.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.	0.615
A0A2I1BSL3	A0A2I1C4Q2	GH16 domain-containing protein.	Putative splicing factor 3a subunit 2.	0.792
A0A2I1BSL3	A0A2I1C9N3	GH16 domain-containing protein.	Putative formin binding protein.	0.794
A0A2I1BSL3	A0A2I1C9S8	GH16 domain-containing protein.	Pre-mRNA-processing ATP-dependent RNA helicase prp5.	0.675
A0A2I1BSL3	A0A2I1C9U1	GH16 domain-containing protein.	Putative cell cycle control protein.	0.710
A0A2I1BSL3	A0A2I1CCX7	GH16 domain-containing protein.	FF domain protein.	0.473
A0A2I1BSL3	A0A2I1CCY0	GH16 domain-containing protein.	Putative U1 snRNP splicing complex subunit.	0.628
A0A2I1BSL3	A0A2I1CDP0	GH16 domain-containing protein.	RNA binding domain protein.	0.529
A0A2I1BSL3	A0A2I1CDT3	GH16 domain-containing protein.	RNA-binding domain-containing protein.	0.902
A0A2I1BSL3	A0A2I1CGI6	GH16 domain-containing protein.	Splicing factor 3b, subunit 2, 145kD.	0.890
A0A2I1BSL3	A0A2I1CIY3	GH16 domain-containing protein.	Small nuclear ribonucleoprotein Sm D2.	0.915
A0A2I1BSL3	A0A2I1CJ37	GH16 domain-containing protein.	RNA-binding domain-containing protein.	0.920
A0A2I1BSL3	A0A2I1CJB5	GH16 domain-containing protein.	WD domain protein.	0.628
A0A2I1BSL3	A0A2I1CMD9	GH16 domain-containing protein.	Uncharacterized protein.	0.663
A0A2I1BSL3	A0A2I1CNK5	GH16 domain-containing protein.	Putative splicing factor 3B subunit 1.	0.915
A0A2I1BZ33	A0A2I1BSL3	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	GH16 domain-containing protein.	0.913