7 items (Aspergillus novofumigatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2I1BX81	Uncharacterized protein. (228 aa)
	A0A2I1C2R9	Putative endosome-associated ubiquitin isopeptidase. (541 aa)
	A0A2I1C3G6	Ubiquitin/40S ribosomal protein S27a fusion. (154 aa)
	A0A2I1C509	Putative polyubiquitin. (305 aa)
	A0A2I1C6D2	BZIP domain-containing protein. (289 aa)
	A0A2I1CJA0	Putative NlpC/P60-like cell-wall peptidase. (242 aa)
	A0A2I1CKY5	Uncharacterized protein. (309 aa)

Your Current Organism:

Aspergillus novofumigatus

NCBI taxonomy Id: 1392255
Other names: A. novofumigatus IBT 16806, Aspergillus novofumigatus IBT 16806

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A2I1BX81	A0A2I1C3G6	Uncharacterized protein.	Ubiquitin/40S ribosomal protein S27a fusion.	0.836
A0A2I1BX81	A0A2I1C509	Uncharacterized protein.	Putative polyubiquitin.	0.860
A0A2I1BX81	A0A2I1C6D2	Uncharacterized protein.	BZIP domain-containing protein.	0.836
A0A2I1C2R9	A0A2I1C3G6	Putative endosome-associated ubiquitin isopeptidase.	Ubiquitin/40S ribosomal protein S27a fusion.	0.957
A0A2I1C2R9	A0A2I1C509	Putative endosome-associated ubiquitin isopeptidase.	Putative polyubiquitin.	0.978
A0A2I1C2R9	A0A2I1C6D2	Putative endosome-associated ubiquitin isopeptidase.	BZIP domain-containing protein.	0.957
A0A2I1C3G6	A0A2I1BX81	Ubiquitin/40S ribosomal protein S27a fusion.	Uncharacterized protein.	0.836
A0A2I1C3G6	A0A2I1C2R9	Ubiquitin/40S ribosomal protein S27a fusion.	Putative endosome-associated ubiquitin isopeptidase.	0.957
A0A2I1C3G6	A0A2I1C509	Ubiquitin/40S ribosomal protein S27a fusion.	Putative polyubiquitin.	0.973
A0A2I1C3G6	A0A2I1CJA0	Ubiquitin/40S ribosomal protein S27a fusion.	Putative NlpC/P60-like cell-wall peptidase.	0.884
A0A2I1C3G6	A0A2I1CKY5	Ubiquitin/40S ribosomal protein S27a fusion.	Uncharacterized protein.	0.884
A0A2I1C509	A0A2I1BX81	Putative polyubiquitin.	Uncharacterized protein.	0.860
A0A2I1C509	A0A2I1C2R9	Putative polyubiquitin.	Putative endosome-associated ubiquitin isopeptidase.	0.978
A0A2I1C509	A0A2I1C3G6	Putative polyubiquitin.	Ubiquitin/40S ribosomal protein S27a fusion.	0.973
A0A2I1C509	A0A2I1C6D2	Putative polyubiquitin.	BZIP domain-containing protein.	0.973
A0A2I1C509	A0A2I1CJA0	Putative polyubiquitin.	Putative NlpC/P60-like cell-wall peptidase.	0.957
A0A2I1C509	A0A2I1CKY5	Putative polyubiquitin.	Uncharacterized protein.	0.957
A0A2I1C6D2	A0A2I1BX81	BZIP domain-containing protein.	Uncharacterized protein.	0.836
A0A2I1C6D2	A0A2I1C2R9	BZIP domain-containing protein.	Putative endosome-associated ubiquitin isopeptidase.	0.957
A0A2I1C6D2	A0A2I1C509	BZIP domain-containing protein.	Putative polyubiquitin.	0.973