44 items (Aspergillus novofumigatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2I1C5L5	CDK-activating kinase assembly factor MAT1. (379 aa)
	A0A2I1BTP4	RNA polymerase II general transcription and DNA repair factor TFIIH component Tfb5. (66 aa)
	A0A2I1BY15	Uncharacterized protein. (110 aa)
	A0A2I1BY77	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1255 aa)
	A0A2I1BZQ9	Putative serine/threonine protein kinase; Belongs to the protein kinase superfamily. (404 aa)
	A0A2I1BZU0	RBP11-like subunits of RNA polymerase. (129 aa)
	A0A2I1BZZ1	Putative COP9 signalosome subunit 8. (216 aa)
	A0A2I1C040	Putative COP9 signalosome subunit 1. (513 aa)
	A0A2I1C079	RNA polymerase II subunit 7. (169 aa)
	A0A2I1C092	Uncharacterized protein. (504 aa)
	A0A2I1C0B3	Putative COP9 signalosome subunit CsnD. (419 aa)
	A0A2I1C0L0	Uncharacterized protein. (419 aa)
	A0A2I1C239	Putative COP9 signalosome subunit 2. (588 aa)
	A0A2I1C3G6	Ubiquitin/40S ribosomal protein S27a fusion. (154 aa)
	A0A2I1C4H3	PCI domain-containing protein. (159 aa)
	A0A2I1C4I4	Uncharacterized protein. (143 aa)
	A0A2I1C4N3	Metallothionein-I gene transcription activator. (75 aa)
	A0A2I1C4T6	Putative RNA polymerase II transcription factor-related protein. (601 aa)
	A0A2I1C509	Putative polyubiquitin. (305 aa)
	A0A2I1C5B2	WD repeat protein. (486 aa)
	A0A2I1C6D2	BZIP domain-containing protein. (289 aa)
	A0A2I1C6S1	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (479 aa)
	A0A2I1C6S7	Putative DNA repair protein Rhp26/Rad26. (1115 aa)
	A0A2I1C794	Uncharacterized protein. (925 aa)
	A0A2I1C8F1	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1718 aa)
	A0A2I1C8H4	Putative TFIIH complex helicase Rad3. (794 aa)
	A0A2I1C8K3	RNA polymerase subunit. (234 aa)
	A0A2I1CAW4	DNA-directed RNA polymerase I, II, and III subunit Rpb6. (161 aa)
	A0A2I1CBH2	DUF1740-domain-containing protein. (1161 aa)
	A0A2I1CC94	Putative UV-damaged DNA binding protein. (1140 aa)
	A0A2I1CG91	Putative TFIIH complex helicase Ssl2. (829 aa)
	A0A2I1CGG7	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (446 aa)
	A0A2I1CGM5	Putative ubiquitin ligase subunit HrtA. (109 aa)
	A0A2I1CH80	Putative cyclin Ccl1; Belongs to the cyclin family. (432 aa)
	A0A2I1CH93	Putative COP9 signalosome subunit 6. (399 aa)
	A0A2I1CID6	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (145 aa)
	A0A2I1CII8	Putative transcription factor TFIIH subunit Tfb4. (385 aa)
	A0A2I1CIV1	Putative ubiquitin ligase subunit CulD; Belongs to the cullin family. (896 aa)
	A0A2I1CKZ3	Putative DNA excision repair protein. (1008 aa)
	A0A2I1CLR7	Uncharacterized protein. (497 aa)
	A0A2I1CM31	Putative DNA directed RNA polymerase II 15 kDa subunit. (122 aa)
	A0A2I1CN96	Putative peptidyl prolyl cis-trans isomerase cyclophilin. (152 aa)
	A0A2I1CNA7	RNA polymerase II subunit 3. (336 aa)
	A0A2I1CPB2	COP9 signalosome complex subunit 5. (334 aa)

Your Current Organism:

Aspergillus novofumigatus

NCBI taxonomy Id: 1392255
Other names: A. novofumigatus IBT 16806, Aspergillus novofumigatus IBT 16806

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A2I1BTP4	A0A2I1BY15	RNA polymerase II general transcription and DNA repair factor TFIIH component Tfb5.	Uncharacterized protein.	0.872
A0A2I1BTP4	A0A2I1BY77	RNA polymerase II general transcription and DNA repair factor TFIIH component Tfb5.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.864
A0A2I1BTP4	A0A2I1BZQ9	RNA polymerase II general transcription and DNA repair factor TFIIH component Tfb5.	Putative serine/threonine protein kinase; Belongs to the protein kinase superfamily.	0.836
A0A2I1BTP4	A0A2I1BZU0	RNA polymerase II general transcription and DNA repair factor TFIIH component Tfb5.	RBP11-like subunits of RNA polymerase.	0.864
A0A2I1BTP4	A0A2I1C079	RNA polymerase II general transcription and DNA repair factor TFIIH component Tfb5.	RNA polymerase II subunit 7.	0.856
A0A2I1BTP4	A0A2I1C092	RNA polymerase II general transcription and DNA repair factor TFIIH component Tfb5.	Uncharacterized protein.	0.835
A0A2I1BTP4	A0A2I1C0L0	RNA polymerase II general transcription and DNA repair factor TFIIH component Tfb5.	Uncharacterized protein.	0.935
A0A2I1BTP4	A0A2I1C4N3	RNA polymerase II general transcription and DNA repair factor TFIIH component Tfb5.	Metallothionein-I gene transcription activator.	0.872
A0A2I1BTP4	A0A2I1C4T6	RNA polymerase II general transcription and DNA repair factor TFIIH component Tfb5.	Putative RNA polymerase II transcription factor-related protein.	0.988
A0A2I1BTP4	A0A2I1C5B2	RNA polymerase II general transcription and DNA repair factor TFIIH component Tfb5.	WD repeat protein.	0.507
A0A2I1BTP4	A0A2I1C5L5	RNA polymerase II general transcription and DNA repair factor TFIIH component Tfb5.	CDK-activating kinase assembly factor MAT1.	0.980
A0A2I1BTP4	A0A2I1C6S1	RNA polymerase II general transcription and DNA repair factor TFIIH component Tfb5.	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.998
A0A2I1BTP4	A0A2I1C6S7	RNA polymerase II general transcription and DNA repair factor TFIIH component Tfb5.	Putative DNA repair protein Rhp26/Rad26.	0.644
A0A2I1BTP4	A0A2I1C794	RNA polymerase II general transcription and DNA repair factor TFIIH component Tfb5.	Uncharacterized protein.	0.668
A0A2I1BTP4	A0A2I1C8F1	RNA polymerase II general transcription and DNA repair factor TFIIH component Tfb5.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.858
A0A2I1BTP4	A0A2I1C8H4	RNA polymerase II general transcription and DNA repair factor TFIIH component Tfb5.	Putative TFIIH complex helicase Rad3.	0.983
A0A2I1BTP4	A0A2I1C8K3	RNA polymerase II general transcription and DNA repair factor TFIIH component Tfb5.	RNA polymerase subunit.	0.864
A0A2I1BTP4	A0A2I1CAW4	RNA polymerase II general transcription and DNA repair factor TFIIH component Tfb5.	DNA-directed RNA polymerase I, II, and III subunit Rpb6.	0.864
A0A2I1BTP4	A0A2I1CC94	RNA polymerase II general transcription and DNA repair factor TFIIH component Tfb5.	Putative UV-damaged DNA binding protein.	0.673
A0A2I1BTP4	A0A2I1CG91	RNA polymerase II general transcription and DNA repair factor TFIIH component Tfb5.	Putative TFIIH complex helicase Ssl2.	0.992