(14 nodes) Mixed, incl. Carbonate dehydratase activity, and Outer kinetochore network (Sparassis crispa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SCP_0203000	Acyl-CoA dehydrogenase apdG. (512 aa)
	SCP_0209950	DASH complex subunit SPC19. (145 aa)
	SCP_0300320	DASH complex subunit dad4. (68 aa)
	SCP_0307420	Uncharacterized protein. (308 aa)
	SCP_0310640	Uncharacterized protein. (121 aa)
	SCP_0400200	Uncharacterized protein. (125 aa)
	SCP_0401000	DASH complex subunit DAD2. (106 aa)
	SCP_0408240	Protein SIP5. (604 aa)
	SCP_0500670	Uncharacterized protein. (333 aa)
	SCP_0700670	DASH complex subunit DAD1. (99 aa)
	SCP_1000180	Carbonic anhydrase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family. (201 aa)
	SCP_1200250	Carbonic anhydrase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family. (202 aa)
	SCP_1200950	Carbonic anhydrase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family. (169 aa)
	SCP_1402990	Uncharacterized protein. (274 aa)

Your Current Organism:

Sparassis crispa

NCBI taxonomy Id: 139825
Other names: S. crispa

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SCP_0203000	SCP_0209950	A0A401GAE8	A0A401GC96	Acyl-CoA dehydrogenase apdG.	DASH complex subunit SPC19.	0.961
SCP_0203000	SCP_0300320	A0A401GAE8	A0A401GDS8	Acyl-CoA dehydrogenase apdG.	DASH complex subunit dad4.	0.767
SCP_0203000	SCP_0307420	A0A401GAE8	A0A401GFS7	Acyl-CoA dehydrogenase apdG.	Uncharacterized protein.	0.764
SCP_0203000	SCP_0401000	A0A401GAE8	A0A401GHT9	Acyl-CoA dehydrogenase apdG.	DASH complex subunit DAD2.	0.959
SCP_0203000	SCP_0700670	A0A401GAE8	A0A401GRN8	Acyl-CoA dehydrogenase apdG.	DASH complex subunit DAD1.	0.741
SCP_0203000	SCP_1200950	A0A401GAE8	A0A401H0F2	Acyl-CoA dehydrogenase apdG.	Carbonic anhydrase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.	0.606
SCP_0203000	SCP_1402990	A0A401GAE8	A0A401H3A2	Acyl-CoA dehydrogenase apdG.	Uncharacterized protein.	0.955
SCP_0209950	SCP_0203000	A0A401GC96	A0A401GAE8	DASH complex subunit SPC19.	Acyl-CoA dehydrogenase apdG.	0.961
SCP_0209950	SCP_0300320	A0A401GC96	A0A401GDS8	DASH complex subunit SPC19.	DASH complex subunit dad4.	0.934
SCP_0209950	SCP_0307420	A0A401GC96	A0A401GFS7	DASH complex subunit SPC19.	Uncharacterized protein.	0.871
SCP_0209950	SCP_0401000	A0A401GC96	A0A401GHT9	DASH complex subunit SPC19.	DASH complex subunit DAD2.	0.963
SCP_0209950	SCP_0700670	A0A401GC96	A0A401GRN8	DASH complex subunit SPC19.	DASH complex subunit DAD1.	0.827
SCP_0209950	SCP_1200950	A0A401GC96	A0A401H0F2	DASH complex subunit SPC19.	Carbonic anhydrase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.	0.630
SCP_0209950	SCP_1402990	A0A401GC96	A0A401H3A2	DASH complex subunit SPC19.	Uncharacterized protein.	0.970
SCP_0300320	SCP_0203000	A0A401GDS8	A0A401GAE8	DASH complex subunit dad4.	Acyl-CoA dehydrogenase apdG.	0.767
SCP_0300320	SCP_0209950	A0A401GDS8	A0A401GC96	DASH complex subunit dad4.	DASH complex subunit SPC19.	0.934
SCP_0300320	SCP_0307420	A0A401GDS8	A0A401GFS7	DASH complex subunit dad4.	Uncharacterized protein.	0.472
SCP_0300320	SCP_0401000	A0A401GDS8	A0A401GHT9	DASH complex subunit dad4.	DASH complex subunit DAD2.	0.738
SCP_0300320	SCP_1402990	A0A401GDS8	A0A401H3A2	DASH complex subunit dad4.	Uncharacterized protein.	0.866
SCP_0307420	SCP_0203000	A0A401GFS7	A0A401GAE8	Uncharacterized protein.	Acyl-CoA dehydrogenase apdG.	0.764