6 items (Sparassis crispa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SCP_0209600	Uncharacterized protein. (174 aa)
	SCP_0213120	Uncharacterized protein. (332 aa)
	SCP_0701300	Uncharacterized protein. (331 aa)
	SCP_1200220	Acyl-CoA dehydrogenase apdG. (519 aa)
	SCP_1201020	Protein arginine methyltransferase NDUFAF7; Arginine methyltransferase involved in the assembly or stability of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I). (473 aa)
	SCP_1303430	Complex I intermediate-associated protein 30, mitochondrial. (262 aa)

Your Current Organism:

Sparassis crispa

NCBI taxonomy Id: 139825
Other names: S. crispa

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SCP_0209600	SCP_0213120	A0A401GC61	A0A401GD46	Uncharacterized protein.	Uncharacterized protein.	0.984
SCP_0209600	SCP_0701300	A0A401GC61	A0A401GRU6	Uncharacterized protein.	Uncharacterized protein.	0.703
SCP_0209600	SCP_1200220	A0A401GC61	A0A401H050	Uncharacterized protein.	Acyl-CoA dehydrogenase apdG.	0.939
SCP_0209600	SCP_1201020	A0A401GC61	A0A401H0C0	Uncharacterized protein.	Protein arginine methyltransferase NDUFAF7; Arginine methyltransferase involved in the assembly or stability of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).	0.735
SCP_0209600	SCP_1303430	A0A401GC61	A0A401H259	Uncharacterized protein.	Complex I intermediate-associated protein 30, mitochondrial.	0.989
SCP_0213120	SCP_0209600	A0A401GD46	A0A401GC61	Uncharacterized protein.	Uncharacterized protein.	0.984
SCP_0213120	SCP_0701300	A0A401GD46	A0A401GRU6	Uncharacterized protein.	Uncharacterized protein.	0.824
SCP_0213120	SCP_1200220	A0A401GD46	A0A401H050	Uncharacterized protein.	Acyl-CoA dehydrogenase apdG.	0.688
SCP_0213120	SCP_1201020	A0A401GD46	A0A401H0C0	Uncharacterized protein.	Protein arginine methyltransferase NDUFAF7; Arginine methyltransferase involved in the assembly or stability of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).	0.883
SCP_0213120	SCP_1303430	A0A401GD46	A0A401H259	Uncharacterized protein.	Complex I intermediate-associated protein 30, mitochondrial.	0.740
SCP_0701300	SCP_0209600	A0A401GRU6	A0A401GC61	Uncharacterized protein.	Uncharacterized protein.	0.703
SCP_0701300	SCP_0213120	A0A401GRU6	A0A401GD46	Uncharacterized protein.	Uncharacterized protein.	0.824
SCP_0701300	SCP_1200220	A0A401GRU6	A0A401H050	Uncharacterized protein.	Acyl-CoA dehydrogenase apdG.	0.637
SCP_0701300	SCP_1201020	A0A401GRU6	A0A401H0C0	Uncharacterized protein.	Protein arginine methyltransferase NDUFAF7; Arginine methyltransferase involved in the assembly or stability of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).	0.736
SCP_0701300	SCP_1303430	A0A401GRU6	A0A401H259	Uncharacterized protein.	Complex I intermediate-associated protein 30, mitochondrial.	0.699
SCP_1200220	SCP_0209600	A0A401H050	A0A401GC61	Acyl-CoA dehydrogenase apdG.	Uncharacterized protein.	0.939
SCP_1200220	SCP_0213120	A0A401H050	A0A401GD46	Acyl-CoA dehydrogenase apdG.	Uncharacterized protein.	0.688
SCP_1200220	SCP_0701300	A0A401H050	A0A401GRU6	Acyl-CoA dehydrogenase apdG.	Uncharacterized protein.	0.637
SCP_1200220	SCP_1201020	A0A401H050	A0A401H0C0	Acyl-CoA dehydrogenase apdG.	Protein arginine methyltransferase NDUFAF7; Arginine methyltransferase involved in the assembly or stability of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).	0.702
SCP_1200220	SCP_1303430	A0A401H050	A0A401H259	Acyl-CoA dehydrogenase apdG.	Complex I intermediate-associated protein 30, mitochondrial.	0.982