95 items (Sparassis crispa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SCP_0102200	Uncharacterized protein. (234 aa)
	SCP_0104060	Isocitrate lyase. (571 aa)
	SCP_0106320	Uncharacterized protein. (1184 aa)
	SCP_0107150	Uncharacterized protein. (241 aa)
	SCP_0108020	Peroxisomal biogenesis factor 11. (249 aa)
	SCP_0108040	Lipoyl synthase, mitochondrial; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives. (390 aa)
	SCP_0108300	Elongation of fatty acids protein. (295 aa)
	SCP_0109920	Uncharacterized protein. (281 aa)
	SCP_0111030	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. (120 aa)
	SCP_0111320	Mitochondrial carnitine carrier; Belongs to the mitochondrial carrier (TC 2.A.29) family. (380 aa)
	SCP_0111740	3-ketoacyl-CoA thiolase B, peroxisomal; Belongs to the thiolase-like superfamily. Thiolase family. (412 aa)
	SCP_0113010	Peroxisomal long-chain fatty acid import protein. (711 aa)
	SCP_0113820	Thiolase-like protein; Belongs to the thiolase-like superfamily. Thiolase family. (462 aa)
	SCP_0114420	Uncharacterized protein. (395 aa)
	SCP_0116160	Uncharacterized protein. (323 aa)
	SCP_0116660	Peroxisomal 2,4-dienoyl-CoA reductase SPS19. (287 aa)
	SCP_0201150	Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial. (424 aa)
	SCP_0204610	Uncharacterized protein. (453 aa)
	SCP_0205170	Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (413 aa)
	SCP_0205570	ACBP-domain-containing protein. (496 aa)
	SCP_0205860	DUF962-domain-containing protein. (198 aa)
	SCP_0206550	Malonamoyl-CoA synthetase vrtB. (704 aa)
	SCP_0210820	LNS2-domain-containing protein. (1206 aa)
	SCP_0211360	Very-long-chain 3-oxoacyl-CoA reductase. (353 aa)
	SCP_0212130	Uncharacterized protein; Belongs to the enoyl-CoA hydratase/isomerase family. (289 aa)
	SCP_0213150	Acyl-protein thioesterase 1. (240 aa)
	SCP_0300680	Fas_alpha_ACP domain-containing protein. (227 aa)
	SCP_0303390	Malonamoyl-CoA synthetase vrtB. (679 aa)
	SCP_0305370	Uncharacterized protein. (781 aa)
	SCP_0305880	Glutaryl-CoA dehydrogenase, mitochondrial. (336 aa)
	SCP_0306480	Orsellinic acid synthase. (2098 aa)
	SCP_0306220	Neutral ceramidase. (745 aa)
	SCP_0307780	AB-hydrolase YheT. (451 aa)
	SCP_0308340	2-methylcitrate dehydratase, mitochondrial. (529 aa)
	SCP_0308970	Probable electron transfer flavoprotein subunit alpha. (349 aa)
	SCP_0312370	Very-long-chain 3-oxoacyl-CoA reductase; Component of the microsomal membrane bound fatty acid elongation system, which produces the 26-carbon very long-chain fatty acids (VLCFA) from palmitate. Catalyzes the reduction of the 3- ketoacyl-CoA intermediate that is formed in each cycle of fatty acid elongation. VLCFAs serve as precursors for ceramide and sphingolipids. (351 aa)
	SCP_0313120	Acyl-CoA dehydrogenase NM domain-like protein. (570 aa)
	SCP_0403060	Uncharacterized protein. (451 aa)
	SCP_0407310	HAD-like protein. (285 aa)
	SCP_0407290	Long-chain-fatty-acid--CoA ligase 2. (692 aa)
	SCP_0413390	Uncharacterized protein. (518 aa)
	SCP_0500380	Uncharacterized protein. (304 aa)
	SCP_0500980	2-methylcitrate dehydratase, mitochondrial. (479 aa)
	SCP_0506110	Uncharacterized protein. (1034 aa)
	SCP_0506400	Uncharacterized protein. (715 aa)
	SCP_0506410	Uncharacterized protein. (221 aa)
	SCP_0507110	ClpP/crotonase; Belongs to the enoyl-CoA hydratase/isomerase family. (322 aa)
	SCP_0604780	Linoleate 10R-lipoxygenase. (1008 aa)
	SCP_0702080	Esterase. (165 aa)
	SCP_0702060	Uncharacterized protein. (598 aa)
	SCP_0703590	CoA-transferase family III. (487 aa)
	SCP_0705170	Uncharacterized protein. (597 aa)
	SCP_0706700	Uncharacterized protein. (1091 aa)
	SCP_0805810	Uncharacterized protein. (262 aa)
	SCP_0900690	3-ketoacyl-CoA thiolase, peroxisomal; Belongs to the thiolase-like superfamily. Thiolase family. (415 aa)
	SCP_0900660	Thiolase_N domain-containing protein. (185 aa)
	SCP_0901600	Acetyl-CoA carboxylase. (2230 aa)
	SCP_0902990	Enoyl-[acyl-carrier-protein] reductase, mitochondrial. (362 aa)
	SCP_0904260	Linoleate 10R-lipoxygenase. (1057 aa)
	SCP_0905300	Acyl-CoA desaturase. (385 aa)
	SCP_1001000	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family. (670 aa)
	SCP_1000890	Long-chain-fatty-acid--CoA ligase 2. (693 aa)
	SCP_1100870	Ceramide very long chain fatty acid hydroxylase; Ceramide hydroxylase involved in the hydroxylation of sphingolipid-associated very long chain fatty acids. Postulated to hydroxylate the very long chain fatty acid of dihydroceramides and phytoceramides at C-2; Belongs to the sterol desaturase family. SCS7 subfamily. (372 aa)
	SCP_1100990	AMP-binding_C domain-containing protein. (144 aa)
	SCP_1101170	Peroxisomal-coenzyme A. (634 aa)
	SCP_1101480	Uncharacterized protein. (304 aa)
	SCP_1102220	Very-long-chain 3-oxoacyl-CoA reductase. (231 aa)
	SCP_1102320	Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates. (484 aa)
	SCP_1102280	Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates. (482 aa)
	SCP_1102260	Very-long-chain 3-oxoacyl-CoA reductase. (322 aa)
	SCP_1103630	ATP-citrate synthase; In the C-terminal section; belongs to the succinate/malate CoA ligase alpha subunit family. (1158 aa)
	SCP_1200220	Acyl-CoA dehydrogenase apdG. (519 aa)
	SCP_1200300	Peroxisomal hydratase-dehydrogenase-epimerase. (893 aa)
	SCP_1200230	Isopenicillin N epimerase component 2. (448 aa)
	SCP_1201220	Peroxisomal adenine nucleotide transporter 1; Belongs to the mitochondrial carrier (TC 2.A.29) family. (394 aa)
	SCP_1200940	Fatty acid synthase. (3917 aa)
	SCP_1201070	Uncharacterized protein. (339 aa)
	SCP_1203200	Uncharacterized protein. (247 aa)
	SCP_1203090	Uncharacterized protein. (2451 aa)
	SCP_1301800	Uncharacterized protein. (385 aa)
	SCP_1301790	Uncharacterized protein. (651 aa)
	SCP_1301780	Uncharacterized protein. (295 aa)
	SCP_1301650	Uncharacterized protein. (386 aa)
	SCP_1301950	Carn_acyltransf domain-containing protein. (627 aa)
	SCP_1304060	Enoyl reductase. (312 aa)
	SCP_1500250	Peroxisomal long-chain fatty acid import protein. (763 aa)
	SCP_1501700	Uncharacterized protein. (633 aa)
	SCP_1501990	Uncharacterized protein. (103 aa)
	SCP_1502000	Uncharacterized protein. (231 aa)
	SCP_1502380	Uncharacterized protein. (121 aa)
	SCP_1601690	Uncharacterized protein. (1312 aa)
	SCP_1602230	Isopenicillin N epimerase component 2. (430 aa)
	SCP_1701430	Peroxisomal dehydratase. (314 aa)
	SCP_1702140	Putative polyketide synthase. (2545 aa)
	SCP_1702560	Putative polyketide synthase. (2583 aa)

Your Current Organism:

Sparassis crispa

NCBI taxonomy Id: 139825
Other names: S. crispa

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SCP_0102200	SCP_0107150	A0A401G5A9	A0A401G6P7	Uncharacterized protein.	Uncharacterized protein.	0.625
SCP_0102200	SCP_0109920	A0A401G5A9	A0A401G7F8	Uncharacterized protein.	Uncharacterized protein.	0.419
SCP_0102200	SCP_0111030	A0A401G5A9	A0A401G7R5	Uncharacterized protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.546
SCP_0102200	SCP_0113820	A0A401G5A9	A0A401G8M9	Uncharacterized protein.	Thiolase-like protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.933
SCP_0102200	SCP_0116160	A0A401G5A9	A0A401G980	Uncharacterized protein.	Uncharacterized protein.	0.424
SCP_0102200	SCP_0116660	A0A401G5A9	A0A401G9F9	Uncharacterized protein.	Peroxisomal 2,4-dienoyl-CoA reductase SPS19.	0.579
SCP_0102200	SCP_0201150	A0A401G5A9	A0A401G9S8	Uncharacterized protein.	Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial.	0.876
SCP_0102200	SCP_0204610	A0A401G5A9	A0A401GAU4	Uncharacterized protein.	Uncharacterized protein.	0.671
SCP_0102200	SCP_0205170	A0A401G5A9	A0A401GAY4	Uncharacterized protein.	Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	0.609
SCP_0102200	SCP_0205570	A0A401G5A9	A0A401GB29	Uncharacterized protein.	ACBP-domain-containing protein.	0.625
SCP_0102200	SCP_0206550	A0A401G5A9	A0A401GBB5	Uncharacterized protein.	Malonamoyl-CoA synthetase vrtB.	0.610
SCP_0102200	SCP_0211360	A0A401G5A9	A0A401GCN0	Uncharacterized protein.	Very-long-chain 3-oxoacyl-CoA reductase.	0.409
SCP_0102200	SCP_0212130	A0A401G5A9	A0A401GCZ7	Uncharacterized protein.	Uncharacterized protein; Belongs to the enoyl-CoA hydratase/isomerase family.	0.865
SCP_0102200	SCP_0303390	A0A401G5A9	A0A401GEK3	Uncharacterized protein.	Malonamoyl-CoA synthetase vrtB.	0.610
SCP_0102200	SCP_0305880	A0A401G5A9	A0A401GFA6	Uncharacterized protein.	Glutaryl-CoA dehydrogenase, mitochondrial.	0.748
SCP_0102200	SCP_0308970	A0A401G5A9	A0A401GGC4	Uncharacterized protein.	Probable electron transfer flavoprotein subunit alpha.	0.814
SCP_0102200	SCP_0312370	A0A401G5A9	A0A401GH67	Uncharacterized protein.	Very-long-chain 3-oxoacyl-CoA reductase; Component of the microsomal membrane bound fatty acid elongation system, which produces the 26-carbon very long-chain fatty acids (VLCFA) from palmitate. Catalyzes the reduction of the 3- ketoacyl-CoA intermediate that is formed in each cycle of fatty acid elongation. VLCFAs serve as precursors for ceramide and sphingolipids.	0.409
SCP_0102200	SCP_0313120	A0A401G5A9	A0A401GHJ0	Uncharacterized protein.	Acyl-CoA dehydrogenase NM domain-like protein.	0.802
SCP_0102200	SCP_0407290	A0A401G5A9	A0A401GJK7	Uncharacterized protein.	Long-chain-fatty-acid--CoA ligase 2.	0.560
SCP_0102200	SCP_0413390	A0A401G5A9	A0A401GLC7	Uncharacterized protein.	Uncharacterized protein.	0.865