17 items (Sparassis crispa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SCP_1800340	ATP synthase subunit g, mitochondrial. (172 aa)
	SCP_1900650	ATP synthase subunit J, mitochondrial. (62 aa)
	SCP_0401940	Uncharacterized protein. (73 aa)
	SCP_0401140	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. (542 aa)
	SCP_0308710	ATP synthase subunit delta, mitochondrial. (164 aa)
	SCP_0308720	Uncharacterized protein. (1167 aa)
	SCP_0307010	ATP synthase subunit 5, mitochondrial. (211 aa)
	SCP_0204300	ATP synthase subunit d, mitochondrial; Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the cent [...] (173 aa)
	SCP_0103980	Uncharacterized protein. (89 aa)
	SCP_0409180	V-type proton ATPase catalytic subunit A. (638 aa)
	SCP_0503810	ATP synthase subunit gamma. (297 aa)
	SCP_0606350	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q). (270 aa)
	SCP_0706670	ATP synthase subunit f, mitochondrial. (98 aa)
	SCP_0902510	Uncharacterized protein. (1379 aa)
	SCP_1002450	Uncharacterized protein. (125 aa)
	SCP_1102130	Uncharacterized protein. (78 aa)
	SCP_1601060	ATP synthase subunit 4, mitochondrial. (240 aa)

Your Current Organism:

Sparassis crispa

NCBI taxonomy Id: 139825
Other names: S. crispa

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SCP_0103980	SCP_0204300	A0A401G5U2	A0A401GAR2	Uncharacterized protein.	ATP synthase subunit d, mitochondrial; Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the cent [...]	0.563
SCP_0103980	SCP_0308710	A0A401G5U2	A0A401GG94	Uncharacterized protein.	ATP synthase subunit delta, mitochondrial.	0.440
SCP_0103980	SCP_0401140	A0A401G5U2	A0A401GHZ2	Uncharacterized protein.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.959
SCP_0103980	SCP_0401940	A0A401G5U2	A0A401GI84	Uncharacterized protein.	Uncharacterized protein.	0.516
SCP_0103980	SCP_0503810	A0A401G5U2	A0A401GM84	Uncharacterized protein.	ATP synthase subunit gamma.	0.555
SCP_0103980	SCP_0706670	A0A401G5U2	A0A401GTG8	Uncharacterized protein.	ATP synthase subunit f, mitochondrial.	0.533
SCP_0103980	SCP_0902510	A0A401G5U2	A0A401GW13	Uncharacterized protein.	Uncharacterized protein.	0.530
SCP_0103980	SCP_1002450	A0A401G5U2	A0A401GXW2	Uncharacterized protein.	Uncharacterized protein.	0.654
SCP_0103980	SCP_1102130	A0A401G5U2	A0A401GZD0	Uncharacterized protein.	Uncharacterized protein.	0.845
SCP_0103980	SCP_1601060	A0A401G5U2	A0A401H4U5	Uncharacterized protein.	ATP synthase subunit 4, mitochondrial.	0.982
SCP_0103980	SCP_1800340	A0A401G5U2	A0A401H6G6	Uncharacterized protein.	ATP synthase subunit g, mitochondrial.	0.856
SCP_0103980	SCP_1900650	A0A401G5U2	A0A401H703	Uncharacterized protein.	ATP synthase subunit J, mitochondrial.	0.688
SCP_0204300	SCP_0103980	A0A401GAR2	A0A401G5U2	ATP synthase subunit d, mitochondrial; Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the cent [...]	Uncharacterized protein.	0.563
SCP_0204300	SCP_0307010	A0A401GAR2	A0A401GFM0	ATP synthase subunit d, mitochondrial; Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the cent [...]	ATP synthase subunit 5, mitochondrial.	0.999
SCP_0204300	SCP_0308710	A0A401GAR2	A0A401GG94	ATP synthase subunit d, mitochondrial; Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the cent [...]	ATP synthase subunit delta, mitochondrial.	0.996
SCP_0204300	SCP_0308720	A0A401GAR2	A0A401GG31	ATP synthase subunit d, mitochondrial; Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the cent [...]	Uncharacterized protein.	0.995
SCP_0204300	SCP_0401140	A0A401GAR2	A0A401GHZ2	ATP synthase subunit d, mitochondrial; Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the cent [...]	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.999
SCP_0204300	SCP_0401940	A0A401GAR2	A0A401GI84	ATP synthase subunit d, mitochondrial; Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the cent [...]	Uncharacterized protein.	0.999
SCP_0204300	SCP_0503810	A0A401GAR2	A0A401GM84	ATP synthase subunit d, mitochondrial; Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the cent [...]	ATP synthase subunit gamma.	0.999
SCP_0204300	SCP_0606350	A0A401GAR2	A0A401GR15	ATP synthase subunit d, mitochondrial; Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the cent [...]	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	0.885