23 items (Sparassis crispa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SCP_0313440	Uncharacterized protein. (403 aa)
	SCP_1800130	Uncharacterized protein. (443 aa)
	SCP_1603030	Uncharacterized protein. (293 aa)
	SCP_1601470	F-box domain-containing protein. (448 aa)
	SCP_1600930	F-box domain-containing protein. (406 aa)
	SCP_1600410	Uncharacterized protein. (432 aa)
	SCP_1600330	Uncharacterized protein. (492 aa)
	SCP_1402390	Uncharacterized protein. (464 aa)
	SCP_1203790	Uncharacterized protein. (745 aa)
	SCP_1203750	Uncharacterized protein. (431 aa)
	SCP_1203340	Uncharacterized protein. (393 aa)
	SCP_1104260	F-box domain-containing protein. (455 aa)
	SCP_1104350	Uncharacterized protein. (429 aa)
	SCP_1103960	F-box domain-containing protein. (526 aa)
	SCP_1104090	Uncharacterized protein. (572 aa)
	SCP_0900830	F-box domain-containing protein. (445 aa)
	SCP_0902180	Glutathione-independent glyoxalase HSP31. (227 aa)
	SCP_0606460	F-box domain-containing protein. (437 aa)
	SCP_0407470	Probable hydroxyacylglutathione hydrolase. (253 aa)
	SCP_0302530	Lactoylglutathione lyase; Catalyzes the conversion of hemimercaptal, formed from methylglyoxal and glutathione, to S-lactoylglutathione. (157 aa)
	SCP_0211350	Uncharacterized protein. (416 aa)
	SCP_0210300	Uncharacterized protein. (443 aa)
	SCP_0206220	Glutathione-independent glyoxalase HSP31. (224 aa)

Your Current Organism:

Sparassis crispa

NCBI taxonomy Id: 139825
Other names: S. crispa

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SCP_0206220	SCP_0407470	A0A401GB78	A0A401GJM5	Glutathione-independent glyoxalase HSP31.	Probable hydroxyacylglutathione hydrolase.	0.726
SCP_0210300	SCP_0407470	A0A401GCC7	A0A401GJM5	Uncharacterized protein.	Probable hydroxyacylglutathione hydrolase.	0.421
SCP_0211350	SCP_0407470	A0A401GCT8	A0A401GJM5	Uncharacterized protein.	Probable hydroxyacylglutathione hydrolase.	0.421
SCP_0302530	SCP_0407470	A0A401GEC8	A0A401GJM5	Lactoylglutathione lyase; Catalyzes the conversion of hemimercaptal, formed from methylglyoxal and glutathione, to S-lactoylglutathione.	Probable hydroxyacylglutathione hydrolase.	0.421
SCP_0313440	SCP_0407470	A0A401GHM2	A0A401GJM5	Uncharacterized protein.	Probable hydroxyacylglutathione hydrolase.	0.421
SCP_0407470	SCP_0206220	A0A401GJM5	A0A401GB78	Probable hydroxyacylglutathione hydrolase.	Glutathione-independent glyoxalase HSP31.	0.726
SCP_0407470	SCP_0210300	A0A401GJM5	A0A401GCC7	Probable hydroxyacylglutathione hydrolase.	Uncharacterized protein.	0.421
SCP_0407470	SCP_0211350	A0A401GJM5	A0A401GCT8	Probable hydroxyacylglutathione hydrolase.	Uncharacterized protein.	0.421
SCP_0407470	SCP_0302530	A0A401GJM5	A0A401GEC8	Probable hydroxyacylglutathione hydrolase.	Lactoylglutathione lyase; Catalyzes the conversion of hemimercaptal, formed from methylglyoxal and glutathione, to S-lactoylglutathione.	0.421
SCP_0407470	SCP_0313440	A0A401GJM5	A0A401GHM2	Probable hydroxyacylglutathione hydrolase.	Uncharacterized protein.	0.421
SCP_0407470	SCP_0606460	A0A401GJM5	A0A401GR07	Probable hydroxyacylglutathione hydrolase.	F-box domain-containing protein.	0.421
SCP_0407470	SCP_0900830	A0A401GJM5	A0A401GWQ8	Probable hydroxyacylglutathione hydrolase.	F-box domain-containing protein.	0.421
SCP_0407470	SCP_0902180	A0A401GJM5	A0A401GVZ1	Probable hydroxyacylglutathione hydrolase.	Glutathione-independent glyoxalase HSP31.	0.726
SCP_0407470	SCP_1103960	A0A401GJM5	A0A401H012	Probable hydroxyacylglutathione hydrolase.	F-box domain-containing protein.	0.421
SCP_0407470	SCP_1104090	A0A401GJM5	A0A401H004	Probable hydroxyacylglutathione hydrolase.	Uncharacterized protein.	0.421
SCP_0407470	SCP_1104260	A0A401GJM5	A0A401H041	Probable hydroxyacylglutathione hydrolase.	F-box domain-containing protein.	0.421
SCP_0407470	SCP_1104350	A0A401GJM5	A0A401H018	Probable hydroxyacylglutathione hydrolase.	Uncharacterized protein.	0.421
SCP_0407470	SCP_1203340	A0A401GJM5	A0A401H103	Probable hydroxyacylglutathione hydrolase.	Uncharacterized protein.	0.421
SCP_0407470	SCP_1203750	A0A401GJM5	A0A401H139	Probable hydroxyacylglutathione hydrolase.	Uncharacterized protein.	0.421
SCP_0407470	SCP_1203790	A0A401GJM5	A0A401H187	Probable hydroxyacylglutathione hydrolase.	Uncharacterized protein.	0.421