5 items (Sparassis crispa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SCP_0702060	Uncharacterized protein. (598 aa)
	SCP_1000930	Cytochrome b-c1 complex subunit 2, mitochondrial. (424 aa)
	SCP_0308710	ATP synthase subunit delta, mitochondrial. (164 aa)
	SCP_0401940	Uncharacterized protein. (73 aa)
	SCP_0308720	Uncharacterized protein. (1167 aa)

Your Current Organism:

Sparassis crispa

NCBI taxonomy Id: 139825
Other names: S. crispa

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SCP_0308710	SCP_0401940	A0A401GG94	A0A401GI84	ATP synthase subunit delta, mitochondrial.	Uncharacterized protein.	0.989
SCP_0308710	SCP_1000930	A0A401GG94	A0A401GXA4	ATP synthase subunit delta, mitochondrial.	Cytochrome b-c1 complex subunit 2, mitochondrial.	0.697
SCP_0308720	SCP_0401940	A0A401GG31	A0A401GI84	Uncharacterized protein.	Uncharacterized protein.	0.983
SCP_0308720	SCP_1000930	A0A401GG31	A0A401GXA4	Uncharacterized protein.	Cytochrome b-c1 complex subunit 2, mitochondrial.	0.697
SCP_0401940	SCP_0308710	A0A401GI84	A0A401GG94	Uncharacterized protein.	ATP synthase subunit delta, mitochondrial.	0.989
SCP_0401940	SCP_0308720	A0A401GI84	A0A401GG31	Uncharacterized protein.	Uncharacterized protein.	0.983
SCP_1000930	SCP_0308710	A0A401GXA4	A0A401GG94	Cytochrome b-c1 complex subunit 2, mitochondrial.	ATP synthase subunit delta, mitochondrial.	0.697
SCP_1000930	SCP_0308720	A0A401GXA4	A0A401GG31	Cytochrome b-c1 complex subunit 2, mitochondrial.	Uncharacterized protein.	0.697