(15 nodes) Nuclear speck network (Sparassis crispa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SCP_0904750	Splicing factor U2AF 59 kDa subunit. (614 aa)
	SCP_1004220	RRM domain-containing protein. (183 aa)
	SCP_1003120	Multiple RNA-binding domain-containing protein. (793 aa)
	SCP_1000270	WD_REPEATS_REGION domain-containing protein. (346 aa)
	SCP_1000280	WD_REPEATS_REGION domain-containing protein. (824 aa)
	SCP_0705130	WD_REPEATS_REGION domain-containing protein. (785 aa)
	SCP_0703880	Uncharacterized protein. (888 aa)
	SCP_0400640	Uncharacterized protein. (316 aa)
	SCP_0309890	Uncharacterized protein. (270 aa)
	SCP_0305210	Uncharacterized protein. (167 aa)
	SCP_0204950	Single-stranded TG1-3 DNA-binding protein. (338 aa)
	SCP_0200940	WD_REPEATS_REGION domain-containing protein. (792 aa)
	SCP_1602880	HECT domain-containing protein. (1916 aa)
	SCP_1003110	WD_REPEATS_REGION domain-containing protein. (815 aa)
	SCP_1000260	WD_REPEATS_REGION domain-containing protein. (269 aa)

Your Current Organism:

Sparassis crispa

NCBI taxonomy Id: 139825
Other names: S. crispa

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SCP_0204950	SCP_0400640	A0A401GAW9	A0A401GHU2	Single-stranded TG1-3 DNA-binding protein.	Uncharacterized protein.	0.639
SCP_0204950	SCP_1004220	A0A401GAW9	A0A401GY68	Single-stranded TG1-3 DNA-binding protein.	RRM domain-containing protein.	0.639
SCP_0309890	SCP_0400640	A0A401GGG9	A0A401GHU2	Uncharacterized protein.	Uncharacterized protein.	0.683
SCP_0309890	SCP_0904750	A0A401GGG9	A0A401GWJ6	Uncharacterized protein.	Splicing factor U2AF 59 kDa subunit.	0.784
SCP_0309890	SCP_1004220	A0A401GGG9	A0A401GY68	Uncharacterized protein.	RRM domain-containing protein.	0.639
SCP_0400640	SCP_0204950	A0A401GHU2	A0A401GAW9	Uncharacterized protein.	Single-stranded TG1-3 DNA-binding protein.	0.639
SCP_0400640	SCP_0309890	A0A401GHU2	A0A401GGG9	Uncharacterized protein.	Uncharacterized protein.	0.683
SCP_0400640	SCP_0904750	A0A401GHU2	A0A401GWJ6	Uncharacterized protein.	Splicing factor U2AF 59 kDa subunit.	0.987
SCP_0400640	SCP_1004220	A0A401GHU2	A0A401GY68	Uncharacterized protein.	RRM domain-containing protein.	0.871
SCP_0904750	SCP_0309890	A0A401GWJ6	A0A401GGG9	Splicing factor U2AF 59 kDa subunit.	Uncharacterized protein.	0.784
SCP_0904750	SCP_0400640	A0A401GWJ6	A0A401GHU2	Splicing factor U2AF 59 kDa subunit.	Uncharacterized protein.	0.987
SCP_0904750	SCP_1004220	A0A401GWJ6	A0A401GY68	Splicing factor U2AF 59 kDa subunit.	RRM domain-containing protein.	0.763
SCP_1004220	SCP_0204950	A0A401GY68	A0A401GAW9	RRM domain-containing protein.	Single-stranded TG1-3 DNA-binding protein.	0.639
SCP_1004220	SCP_0309890	A0A401GY68	A0A401GGG9	RRM domain-containing protein.	Uncharacterized protein.	0.639
SCP_1004220	SCP_0400640	A0A401GY68	A0A401GHU2	RRM domain-containing protein.	Uncharacterized protein.	0.871
SCP_1004220	SCP_0904750	A0A401GY68	A0A401GWJ6	RRM domain-containing protein.	Splicing factor U2AF 59 kDa subunit.	0.763