5 items (Sparassis crispa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SCP_0409540	WD_REPEATS_REGION domain-containing protein. (372 aa)
	SCP_0100100	Uncharacterized protein. (812 aa)
	SCP_0403120	Uncharacterized protein. (1194 aa)
	SCP_1101050	RNase H domain-containing protein. (144 aa)
	SCP_0900180	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (726 aa)

Your Current Organism:

Sparassis crispa

NCBI taxonomy Id: 139825
Other names: S. crispa

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SCP_0403120	SCP_0409540	A0A401GIF0	A0A401GK82	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.630
SCP_0403120	SCP_0900180	A0A401GIF0	A0A401GV81	Uncharacterized protein.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.999
SCP_0409540	SCP_0403120	A0A401GK82	A0A401GIF0	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.630
SCP_0409540	SCP_0900180	A0A401GK82	A0A401GV81	WD_REPEATS_REGION domain-containing protein.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.745
SCP_0900180	SCP_0403120	A0A401GV81	A0A401GIF0	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Uncharacterized protein.	0.999
SCP_0900180	SCP_0409540	A0A401GV81	A0A401GK82	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	WD_REPEATS_REGION domain-containing protein.	0.745