5 items (Sparassis crispa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SCP_1401090	annotation not available (509 aa)
	SCP_0201550	Rab proteins geranylgeranyltransferase component A. (560 aa)
	SCP_0201530	Uncharacterized protein. (105 aa)
	SCP_0704690	2-oxoglutarate dehydrogenase, mitochondrial. (1004 aa)
	SCP_0803280	Dihydrolipoyl dehydrogenase. (505 aa)

Your Current Organism:

Sparassis crispa

NCBI taxonomy Id: 139825
Other names: S. crispa

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SCP_0704690	SCP_0803280	A0A401GSS7	A0A401GUC6	2-oxoglutarate dehydrogenase, mitochondrial.	Dihydrolipoyl dehydrogenase.	0.993
SCP_0704690	SCP_1401090	A0A401GSS7	A0A401H2Q3	2-oxoglutarate dehydrogenase, mitochondrial.	annotation not available	0.999
SCP_0803280	SCP_0704690	A0A401GUC6	A0A401GSS7	Dihydrolipoyl dehydrogenase.	2-oxoglutarate dehydrogenase, mitochondrial.	0.993
SCP_0803280	SCP_1401090	A0A401GUC6	A0A401H2Q3	Dihydrolipoyl dehydrogenase.	annotation not available	0.999
SCP_1401090	SCP_0704690	A0A401H2Q3	A0A401GSS7	annotation not available	2-oxoglutarate dehydrogenase, mitochondrial.	0.999
SCP_1401090	SCP_0803280	A0A401H2Q3	A0A401GUC6	annotation not available	Dihydrolipoyl dehydrogenase.	0.999