6 items (Sparassis crispa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SCP_1000900	Uncharacterized protein. (754 aa)
	SCP_0304210	M20_dimer domain-containing protein. (494 aa)
	SCP_0313540	M20_dimer domain-containing protein. (448 aa)
	SCP_0500340	Cys-Gly metallodipeptidase dug1. (477 aa)
	SCP_0702200	Carboxypeptidase S. (571 aa)
	SCP_0904590	Carboxypeptidase S. (593 aa)

Your Current Organism:

Sparassis crispa

NCBI taxonomy Id: 139825
Other names: S. crispa

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SCP_0313540	SCP_0500340	A0A401GHN1	A0A401GLD5	M20_dimer domain-containing protein.	Cys-Gly metallodipeptidase dug1.	0.401
SCP_0500340	SCP_0313540	A0A401GLD5	A0A401GHN1	Cys-Gly metallodipeptidase dug1.	M20_dimer domain-containing protein.	0.401
SCP_0500340	SCP_0702200	A0A401GLD5	A0A401GTG5	Cys-Gly metallodipeptidase dug1.	Carboxypeptidase S.	0.401
SCP_0500340	SCP_0904590	A0A401GLD5	A0A401GWK3	Cys-Gly metallodipeptidase dug1.	Carboxypeptidase S.	0.401
SCP_0500340	SCP_1000900	A0A401GLD5	A0A401GX89	Cys-Gly metallodipeptidase dug1.	Uncharacterized protein.	0.401
SCP_0702200	SCP_0500340	A0A401GTG5	A0A401GLD5	Carboxypeptidase S.	Cys-Gly metallodipeptidase dug1.	0.401
SCP_0904590	SCP_0500340	A0A401GWK3	A0A401GLD5	Carboxypeptidase S.	Cys-Gly metallodipeptidase dug1.	0.401
SCP_1000900	SCP_0500340	A0A401GX89	A0A401GLD5	Uncharacterized protein.	Cys-Gly metallodipeptidase dug1.	0.401