5 items (Sparassis crispa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SCP_0900180	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (726 aa)
	SCP_0804680	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (842 aa)
	SCP_0115780	Nuclear pore protein. (861 aa)
	SCP_0903150	RRM Nup35-type domain-containing protein. (395 aa)
	SUS1	Transcription and mRNA export factor SUS1; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. At the promoters, SAGA is required for recruitment of the basal transcription machinery. It influences RNA polymerase II transcriptional activity through different activities such as TBP interaction and promoter selectivity, interaction with transcription activators, and chromatin modification through histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex required for deubiquitination of [...] (99 aa)

Your Current Organism:

Sparassis crispa

NCBI taxonomy Id: 139825
Other names: S. crispa

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SCP_0115780	SCP_0804680	A0A401G952	A0A401GW04	Nuclear pore protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.995
SCP_0115780	SCP_0900180	A0A401G952	A0A401GV81	Nuclear pore protein.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.999
SCP_0804680	SCP_0115780	A0A401GW04	A0A401G952	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Nuclear pore protein.	0.995
SCP_0804680	SCP_0900180	A0A401GW04	A0A401GV81	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.999
SCP_0900180	SCP_0115780	A0A401GV81	A0A401G952	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Nuclear pore protein.	0.999
SCP_0900180	SCP_0804680	A0A401GV81	A0A401GW04	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.999