38 items (Sparassis crispa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SCP_0308890	RanBD1 domain-containing protein. (667 aa)
	SCP_1502250	Uncharacterized protein. (536 aa)
	SCP_1502240	Uncharacterized protein. (496 aa)
	SCP_1401450	RRM domain-containing protein. (279 aa)
	SCP_1401120	mRNA export protein. (221 aa)
	SCP_1400180	mRNA export protein. (228 aa)
	SCP_1400230	Nup96 domain-containing protein. (877 aa)
	SCP_1300850	Poly(A)+ RNA export protein. (352 aa)
	SCP_1201240	Nucleoporin nup45. (451 aa)
	SCP_1200110	mRNA export factor mex67. (587 aa)
	SCP_1101270	Nucleoporin seh1; Belongs to the WD repeat SEC13 family. (424 aa)
	SCP_1003540	Uncharacterized protein. (2117 aa)
	SCP_1001390	Uncharacterized protein. (2330 aa)
	SCP_0906340	Uncharacterized protein. (836 aa)
	SCP_0906330	Uncharacterized protein. (133 aa)
	SCP_0102730	Uncharacterized protein. (158 aa)
	SCP_0804680	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (842 aa)
	SCP_0900180	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (726 aa)
	SCP_0601940	Uncharacterized protein. (688 aa)
	SCP_0504770	WD repeat-containing protein. (402 aa)
	SCP_0503840	Nucleoporin nup44. (670 aa)
	SCP_0500930	TPR_MLP1_2 domain-containing protein. (1955 aa)
	SCP_0403120	Uncharacterized protein. (1194 aa)
	SCP_0109120	Nucleoporin. (1357 aa)
	SCP_0115780	Nuclear pore protein. (861 aa)
	SCP_0204010	Uncharacterized protein. (1369 aa)
	SCP_0206830	Uncharacterized protein. (1268 aa)
	SCP_0300880	Uncharacterized protein. (1014 aa)
	SCP_0207420	Ran-specific GTPase-activating protein. (214 aa)
	SCP_0209770	Nucleoporin nup82. (848 aa)
	SCP_0213080	Nucleoporin2-domain-containing protein. (1016 aa)
	SCP_0214860	Uncharacterized protein. (2050 aa)
	SCP_0102740	Uncharacterized protein. (133 aa)
	SCP_0102750	Uncharacterized protein. (790 aa)
	SCP_1900760	Uncharacterized protein. (102 aa)
	SCP_1900780	Uncharacterized protein. (133 aa)
	SCP_1900790	Uncharacterized protein. (809 aa)
	SCP_1603070	RanBD1 domain-containing protein. (733 aa)

Your Current Organism:

Sparassis crispa

NCBI taxonomy Id: 139825
Other names: S. crispa

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SCP_0102730	SCP_0109120	A0A401GX09	A0A401G780	Uncharacterized protein.	Nucleoporin.	0.875
SCP_0102730	SCP_0115780	A0A401GX09	A0A401G952	Uncharacterized protein.	Nuclear pore protein.	0.785
SCP_0102730	SCP_0206830	A0A401GX09	A0A401GBH6	Uncharacterized protein.	Uncharacterized protein.	0.731
SCP_0102730	SCP_0207420	A0A401GX09	A0A401GBL2	Uncharacterized protein.	Ran-specific GTPase-activating protein.	0.664
SCP_0102730	SCP_0213080	A0A401GX09	A0A401GD84	Uncharacterized protein.	Nucleoporin2-domain-containing protein.	0.731
SCP_0102730	SCP_0214860	A0A401GX09	A0A401GDL2	Uncharacterized protein.	Uncharacterized protein.	0.826
SCP_0102730	SCP_0403120	A0A401GX09	A0A401GIF0	Uncharacterized protein.	Uncharacterized protein.	0.889
SCP_0102730	SCP_0500930	A0A401GX09	A0A401GLN7	Uncharacterized protein.	TPR_MLP1_2 domain-containing protein.	0.571
SCP_0102730	SCP_0503840	A0A401GX09	A0A401GMB2	Uncharacterized protein.	Nucleoporin nup44.	0.783
SCP_0102730	SCP_0601940	A0A401GX09	A0A401GPS3	Uncharacterized protein.	Uncharacterized protein.	0.733
SCP_0102730	SCP_0804680	A0A401GX09	A0A401GW04	Uncharacterized protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.910
SCP_0102730	SCP_0900180	A0A401GX09	A0A401GV81	Uncharacterized protein.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.882
SCP_0102730	SCP_1001390	A0A401GX09	A0A401GXE3	Uncharacterized protein.	Uncharacterized protein.	0.768
SCP_0102730	SCP_1003540	A0A401GX09	A0A401GY23	Uncharacterized protein.	Uncharacterized protein.	0.882
SCP_0102730	SCP_1101270	A0A401GX09	A0A401GZ58	Uncharacterized protein.	Nucleoporin seh1; Belongs to the WD repeat SEC13 family.	0.866
SCP_0102730	SCP_1200110	A0A401GX09	A0A401H040	Uncharacterized protein.	mRNA export factor mex67.	0.563
SCP_0102730	SCP_1201240	A0A401GX09	A0A401H0I7	Uncharacterized protein.	Nucleoporin nup45.	0.658
SCP_0102730	SCP_1300850	A0A401GX09	A0A401H1N0	Uncharacterized protein.	Poly(A)+ RNA export protein.	0.624
SCP_0102730	SCP_1400230	A0A401GX09	A0A401H2I4	Uncharacterized protein.	Nup96 domain-containing protein.	0.731
SCP_0102730	SCP_1603070	A0A401GX09	A0A401H5I0	Uncharacterized protein.	RanBD1 domain-containing protein.	0.636